The goal of this pacakge is to validate grant data that has passed NDA validation for use in the BSMN. The submission description and instructions for creating a valid submission are available in Synapse here (requires membership in the BSMN consortium to view).
You can install grantdatavalidator with devtools:
devtools::install_github("bsmn/grantdatavalidator")This is a basic example which shows you how to validate manifests uploaded to Synapse.
It assumes that you have uploaded the three required manifest files and annotated them with the appropriate nda_short_name (one of genomics_subject02, genomics_sample03, or nichd_btb02) and grant.
library(grantdatavalidator)
library(synapser)
synLogin()
# A table that aggregates all submitted manifests - don't change this
manifestsviewid <- 'syn12031228'
# the Synapse folder ID of where the three manifests are
parentid <- 'syn12345678'
res <- validate(manifestsviewid, parentid)If you install this package and use RStudio, there is an RMarkdown template available titled 'BSMN Grant Data Validation Report'.