From 96de53cc2d502af50fafa7020ab46fc7397f6690 Mon Sep 17 00:00:00 2001 From: Rori Cremer <6863459+RoriCremer@users.noreply.github.com> Date: Thu, 18 Jul 2024 14:58:45 -0400 Subject: [PATCH 1/2] add temp dir --- .../wdl/extract/summarize_task_monitor_logs_from_file.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/scripts/variantstore/wdl/extract/summarize_task_monitor_logs_from_file.py b/scripts/variantstore/wdl/extract/summarize_task_monitor_logs_from_file.py index 813c3b20363..e9bf599c232 100755 --- a/scripts/variantstore/wdl/extract/summarize_task_monitor_logs_from_file.py +++ b/scripts/variantstore/wdl/extract/summarize_task_monitor_logs_from_file.py @@ -201,4 +201,6 @@ def eprint(*the_args, **kwargs): parser.add_argument('--output', type=str, help='Output Monitoring log summary file', required=True) args = parser.parse_args() + os.mkdir("temp") + parse_monitoring_log_files(args.input, args.output) From 4015f5d93b695920d9dcb248a4dc70a4d78b4a7c Mon Sep 17 00:00:00 2001 From: Rori Cremer <6863459+RoriCremer@users.noreply.github.com> Date: Tue, 30 Jul 2024 10:13:41 -0400 Subject: [PATCH 2/2] only make the dir if it doesnt exist already --- .../wdl/extract/summarize_task_monitor_logs_from_file.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/scripts/variantstore/wdl/extract/summarize_task_monitor_logs_from_file.py b/scripts/variantstore/wdl/extract/summarize_task_monitor_logs_from_file.py index e9bf599c232..6b6f368344b 100755 --- a/scripts/variantstore/wdl/extract/summarize_task_monitor_logs_from_file.py +++ b/scripts/variantstore/wdl/extract/summarize_task_monitor_logs_from_file.py @@ -201,6 +201,7 @@ def eprint(*the_args, **kwargs): parser.add_argument('--output', type=str, help='Output Monitoring log summary file', required=True) args = parser.parse_args() - os.mkdir("temp") + if not os.path.exists("temp"): + os.makedirs("temp") parse_monitoring_log_files(args.input, args.output)