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Missing mutect2_multi_sample.wdl on GitHub page #8136

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felixm3 opened this issue Dec 21, 2022 · 3 comments
Open

Missing mutect2_multi_sample.wdl on GitHub page #8136

felixm3 opened this issue Dec 21, 2022 · 3 comments
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@davidbenjamin

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@felixm3
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felixm3 commented Dec 21, 2022

Bug Report

Affected tool(s) or class(es)

mutect2_multi_sample.wdl

Description

On the Mutect2 GitHub page, it says to use mutect2_multi_sample.wdl for multiple samples.

image

This file is however not listed there.

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Where can we find the file mutect2_multi_sample.wdl please?
@phylyc
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phylyc commented Dec 21, 2022

You are welcome to use mine: https://github.com/phylyc/gatk4-somatic-snvs-indels

@lbergelson
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@davidbenjamin Seems like something needs updating here.

@tbowman22
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Hi, I just wanted to follow up on this chain. Is there a GATK-official mutect2_multi_sample.wdl script anywhere? Thanks!

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@lbergelson @davidbenjamin @phylyc @felixm3 @tbowman22