From fdca109ae100757cff2290455dbcca204b5f90e0 Mon Sep 17 00:00:00 2001 From: Louis Bergelson Date: Wed, 6 Dec 2023 17:00:18 -0500 Subject: [PATCH] unfix minor thing in RampedHaplotypeCallerEngine --- .../walkers/haplotypecaller/RampedHaplotypeCallerEngine.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/RampedHaplotypeCallerEngine.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/RampedHaplotypeCallerEngine.java index f05953978bd..e47245c9f91 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/RampedHaplotypeCallerEngine.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/RampedHaplotypeCallerEngine.java @@ -342,7 +342,7 @@ private void assemble(final CallRegionContext context) { if (assemblyDebugOutStream != null) { assemblyDebugOutStream.write("\nThere were " + untrimmedAssemblyResult.getHaplotypeList().size() + " haplotypes found. Here they are:"); - for (final String haplotype : untrimmedAssemblyResult.getHaplotypeList().stream().map(Haplotype::toString).sorted().toList()) { + for (final String haplotype : untrimmedAssemblyResult.getHaplotypeList().stream().map(Haplotype::toString).sorted().collect(Collectors.toList())) { assemblyDebugOutStream.write(haplotype); } }