From e38968246c7f4ca42f208167cc09a7b144f9b3d4 Mon Sep 17 00:00:00 2001 From: Samuel Lee Date: Tue, 9 Jul 2024 11:54:12 -0400 Subject: [PATCH] Added DeprecatedFeature tags to CNNScoreVariants, CNNVariantTrain, and CNNVariantWriteTensors. --- .../hellbender/tools/walkers/vqsr/CNNScoreVariants.java | 1 + .../hellbender/tools/walkers/vqsr/CNNVariantTrain.java | 1 + .../hellbender/tools/walkers/vqsr/CNNVariantWriteTensors.java | 1 + 3 files changed, 3 insertions(+) diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNScoreVariants.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNScoreVariants.java index a17da13b0cf..88e71d7df40 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNScoreVariants.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNScoreVariants.java @@ -103,6 +103,7 @@ * -weights path/to/my_model_folder/2dmodel.hd5 * */ +@DeprecatedFeature @DocumentedFeature @CommandLineProgramProperties( summary = CNNScoreVariants.USAGE_SUMMARY, diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantTrain.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantTrain.java index 32ea3568b10..8fcdb7454b9 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantTrain.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantTrain.java @@ -57,6 +57,7 @@ oneLineSummary = "Train a CNN model for filtering variants", programGroup = VariantFilteringProgramGroup.class ) +@DeprecatedFeature @DocumentedFeature @ExperimentalFeature public class CNNVariantTrain extends CommandLineProgram { diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantWriteTensors.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantWriteTensors.java index 0fd0ec79e17..c258e553bf6 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantWriteTensors.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantWriteTensors.java @@ -71,6 +71,7 @@ oneLineSummary = "Write variant tensors for training a CNN to filter variants", programGroup = VariantFilteringProgramGroup.class ) +@DeprecatedFeature @DocumentedFeature @ExperimentalFeature public class CNNVariantWriteTensors extends CommandLineProgram {