diff --git a/.dockstore.yml b/.dockstore.yml index 91dfc71623c..ff64075d5a4 100644 --- a/.dockstore.yml +++ b/.dockstore.yml @@ -111,7 +111,6 @@ workflows: branches: - master - ah_var_store - - gg_FixExomes - name: GvsImportGenomes subclass: WDL primaryDescriptorPath: /scripts/variantstore/wdl/GvsImportGenomes.wdl diff --git a/scripts/variantstore/wdl/GvsCreateFilterSet.wdl b/scripts/variantstore/wdl/GvsCreateFilterSet.wdl index 8516f7a6955..55740df726a 100644 --- a/scripts/variantstore/wdl/GvsCreateFilterSet.wdl +++ b/scripts/variantstore/wdl/GvsCreateFilterSet.wdl @@ -315,7 +315,7 @@ task ExtractFilterTask { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22_1d6ddf63e1431bff8005f2f2373f0d25ee586dad" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22" memory: "7 GB" disks: "local-disk 10 HDD" bootDiskSizeGb: 15 @@ -397,7 +397,7 @@ task PopulateFilterSetInfo { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22_1d6ddf63e1431bff8005f2f2373f0d25ee586dad" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22" memory: "3500 MB" disks: "local-disk 250 HDD" bootDiskSizeGb: 15 @@ -457,7 +457,7 @@ task PopulateFilterSetSites { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22_1d6ddf63e1431bff8005f2f2373f0d25ee586dad" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22" memory: "3500 MB" disks: "local-disk 200 HDD" bootDiskSizeGb: 15 @@ -509,7 +509,7 @@ task PopulateFilterSetTranches { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22_1d6ddf63e1431bff8005f2f2373f0d25ee586dad" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22" memory: "3500 MB" disks: "local-disk 200 HDD" bootDiskSizeGb: 15 diff --git a/scripts/variantstore/wdl/GvsExtractCallset.wdl b/scripts/variantstore/wdl/GvsExtractCallset.wdl index d7395cc0db5..ddeade9b082 100644 --- a/scripts/variantstore/wdl/GvsExtractCallset.wdl +++ b/scripts/variantstore/wdl/GvsExtractCallset.wdl @@ -354,7 +354,7 @@ task ExtractTask { echo ~{interval_index},${OUTPUT_FILE_DEST},${OUTPUT_FILE_BYTES},${OUTPUT_FILE_INDEX_DEST},${OUTPUT_FILE_INDEX_BYTES} >> manifest.txt >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22_1d6ddf63e1431bff8005f2f2373f0d25ee586dad" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22" memory: "12 GB" disks: "local-disk 150 HDD" bootDiskSizeGb: 15 diff --git a/scripts/variantstore/wdl/GvsImportGenomes.wdl b/scripts/variantstore/wdl/GvsImportGenomes.wdl index 1980967e4f6..c1e8ef4b6ab 100644 --- a/scripts/variantstore/wdl/GvsImportGenomes.wdl +++ b/scripts/variantstore/wdl/GvsImportGenomes.wdl @@ -323,7 +323,7 @@ task LoadData { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22_1d6ddf63e1431bff8005f2f2373f0d25ee586dad" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22" maxRetries: load_data_maxretries memory: "3.75 GB" disks: "local-disk 50 HDD" diff --git a/scripts/variantstore/wdl/GvsUtils.wdl b/scripts/variantstore/wdl/GvsUtils.wdl index f6f7d2c0c0b..669a84f5feb 100644 --- a/scripts/variantstore/wdl/GvsUtils.wdl +++ b/scripts/variantstore/wdl/GvsUtils.wdl @@ -41,7 +41,7 @@ task MergeVCFs { } runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22_1d6ddf63e1431bff8005f2f2373f0d25ee586dad" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22" preemptible: select_first([preemptible_tries, 3]) memory: "3 GiB" disks: "local-disk ~{disk_size} HDD" @@ -127,7 +127,7 @@ task SplitIntervals { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22_1d6ddf63e1431bff8005f2f2373f0d25ee586dad" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22" bootDiskSizeGb: 15 memory: "~{disk_memory} GB" disks: "local-disk ~{disk_size} HDD" diff --git a/scripts/variantstore/wdl/GvsWarpTasks.wdl b/scripts/variantstore/wdl/GvsWarpTasks.wdl index 1123e48067c..d477af9c12d 100644 --- a/scripts/variantstore/wdl/GvsWarpTasks.wdl +++ b/scripts/variantstore/wdl/GvsWarpTasks.wdl @@ -138,7 +138,7 @@ task GatherTranches { bootDiskSizeGb: 15 disks: "local-disk " + disk_size + " HDD" preemptible: 1 - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22_1d6ddf63e1431bff8005f2f2373f0d25ee586dad" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_06_22" } output {