From d742d384c58f4c6e84aa715ecf687a22c9025e4e Mon Sep 17 00:00:00 2001 From: gbggrant Date: Mon, 26 Aug 2024 16:58:48 -0400 Subject: [PATCH] Stupid error that time. --- scripts/variantstore/wdl/GvsExtractCallset.wdl | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/scripts/variantstore/wdl/GvsExtractCallset.wdl b/scripts/variantstore/wdl/GvsExtractCallset.wdl index 87def334984..2aa35b6acea 100644 --- a/scripts/variantstore/wdl/GvsExtractCallset.wdl +++ b/scripts/variantstore/wdl/GvsExtractCallset.wdl @@ -2,7 +2,7 @@ version 1.0 import "GvsUtils.wdl" as Utils -# A comment?? +# A comment?!? workflow GvsExtractCallset { input { @@ -540,8 +540,6 @@ task CreateManifestAndOptionallyCopyOutputs { OUTPUT_VCF_INDEX=${output_vcf_indices[$i]} LOCAL_VCF_INDEX=$(basename $OUTPUT_VCF_INDEX) - echo ${interval_indices[$i]},${OUTPUT_FILE_DEST},${output_vcf_bytes[$i]},${OUTPUT_FILE_INDEX_DEST},${output_vcf_index_bytes[$i]} - if [ -n "${OUTPUT_GCS_DIR}" ]; then gsutil cp $OUTPUT_VCF ${OUTPUT_GCS_DIR}/ gsutil cp $OUTPUT_VCF_INDEX ${OUTPUT_GCS_DIR}/