From c0ad2ce1c58fda9dd796177cdb5097733d1448aa Mon Sep 17 00:00:00 2001 From: Louis Bergelson Date: Wed, 22 Feb 2023 16:49:05 -0500 Subject: [PATCH] add test data --- .../variantutils/VariantsToTable/expected.numericGT.table | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/expected.numericGT.table diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/expected.numericGT.table b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/expected.numericGT.table new file mode 100644 index 00000000000..9b2ff757971 --- /dev/null +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/VariantsToTable/expected.numericGT.table @@ -0,0 +1,4 @@ +CHROM POS ID REF ALT QUAL FILTER AC AF AN BaseQRankSum ClippingRankSum DP DS END FS HaplotypeScore InbreedingCoeff MLEAC MLEAF MQ MQ0 MQRankSum NEGATIVE_TRAIN_SITE POSITIVE_TRAIN_SITE QD ReadPosRankSum VQSLOD culprit HG00096.GT HG00096.AD HG00096.DP HG00096.GQ HG00096.PL HG00097.GT HG00097.AD HG00097.DP HG00097.GQ HG00097.PL HG00099.GT HG00099.AD HG00099.DP HG00099.GQ HG00099.PL +20 10000054 . CTTTG C 504.42 PASS 0 0.00 6 -0.975 -2.925 22 NA NA 1.899 NA 0.0592 NA NA 59.27 0 -3.212 NA NA 2.43 -0.264 5.10 FS 0/0 2,0 2 6 0,6,119 0/0 10,0 10 29 0,29,592 0/0 10,0 10 30 0,30,598 +20 10000107 . T C 263.95 PASS 0 0.00 6 -0.444 -3.132 25 NA NA 0.948 NA -0.0102 NA NA 59.19 0 2.292 NA true 10.56 0.055 7.76 FS 0/0 5,0 5 15 0,15,387 0/0 13,0 13 42 0,42,786 0/0 7,0 7 24 0,24,548 +20 10000117 . C T 329458.1699999999 PASS 1 0.167 6 10.505 -20.658 28 NA NA 8.305 NA 0.1727 NA NA 59.17 0 2.689 NA true 25.46 -4.688 3.19 ReadPosRankSum 0/0 5,0 5 15 0,15,189 0/1 8,8 16 99 254,0,231 0/0 7,0 7 21 0,21,271