diff --git a/src/main/java/org/broadinstitute/hellbender/cmdline/CommandLineProgram.java b/src/main/java/org/broadinstitute/hellbender/cmdline/CommandLineProgram.java index 182f4522fba..fadea828ace 100644 --- a/src/main/java/org/broadinstitute/hellbender/cmdline/CommandLineProgram.java +++ b/src/main/java/org/broadinstitute/hellbender/cmdline/CommandLineProgram.java @@ -193,8 +193,6 @@ else if(!tempFile.canExecute()) { ); } - - System.setProperty("java.io.tmpdir", IOUtils.getAbsolutePathWithoutFileProtocol(p)); } catch (final AccessDeniedException | NoSuchFileException e) { // TODO: it may be that the program does not need a tmp dir