From 28174871c5b2e99a3044a30c0de24a63d2fee5bc Mon Sep 17 00:00:00 2001 From: Samuel Lee Date: Wed, 13 Dec 2023 00:59:52 -0500 Subject: [PATCH] update gCNV WDL tests --- .../germline/cnv_germline_case_scattered_workflow.json | 4 ++-- .../wes-do-gc-contig-ploidy-model.tar.gz | 4 ++-- .../wes-do-gc-gcnv-model-0.tar.gz | 3 --- .../wes-do-gc-gcnv-model-1.tar.gz | 3 --- .../wes-do-gc-gcnv-model-shard-0.tar.gz | 3 +++ .../wes-do-gc-gcnv-model-shard-1.tar.gz | 3 +++ 6 files changed, 10 insertions(+), 10 deletions(-) delete mode 100644 src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-0.tar.gz delete mode 100644 src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-1.tar.gz create mode 100644 src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-0.tar.gz create mode 100644 src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-1.tar.gz diff --git a/scripts/cnv_cromwell_tests/germline/cnv_germline_case_scattered_workflow.json b/scripts/cnv_cromwell_tests/germline/cnv_germline_case_scattered_workflow.json index aeb0bb8796d..ab85fe78e83 100644 --- a/scripts/cnv_cromwell_tests/germline/cnv_germline_case_scattered_workflow.json +++ b/scripts/cnv_cromwell_tests/germline/cnv_germline_case_scattered_workflow.json @@ -17,8 +17,8 @@ "CNVGermlineCaseScatteredWorkflow.gcnv_max_training_epochs": 1, "CNVGermlineCaseScatteredWorkflow.gcnv_min_training_epochs": 1, "CNVGermlineCaseScatteredWorkflow.gcnv_model_tars": [ - "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-0.tar.gz", - "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-1.tar.gz"], + "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-0.tar.gz", + "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-1.tar.gz"], "CNVGermlineCaseScatteredWorkflow.gcnv_num_thermal_advi_iters": 1, "CNVGermlineCaseScatteredWorkflow.intervals": "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/ice_targets_chr20xy.interval_list", "CNVGermlineCaseScatteredWorkflow.filtered_intervals": "/home/runner/work/gatk/gatk/src/test/resources/large/cnv_germline_workflows_test_files/ice_targets_chr20xy.preprocessed.filtered.interval_list", diff --git a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-contig-ploidy-model.tar.gz b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-contig-ploidy-model.tar.gz index 3a899addca0..c09dd762188 100644 --- a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-contig-ploidy-model.tar.gz +++ b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-contig-ploidy-model.tar.gz @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:a667caea27776a91ae612f57769fd79fde2850fe7d98ce9903c787bccbad1a1e -size 1221 +oid sha256:affb709e24ed8f64bab63a7f07a3b27655fe05952644f0989b0c65d4c8336e40 +size 1216 diff --git a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-0.tar.gz b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-0.tar.gz deleted file mode 100644 index a2817af5f8f..00000000000 --- a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-0.tar.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:dcad7edb5752c9012f3d69b932c09bf6c9b552e3785a8b1c1256aa65ecb38de0 -size 4995 diff --git a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-1.tar.gz b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-1.tar.gz deleted file mode 100644 index 2307cb16fb8..00000000000 --- a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-1.tar.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:74fdf99dbcc233878045812ebc891ce2923f08a9ab87daec1fa483b8afdb02ea -size 5164 diff --git a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-0.tar.gz b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-0.tar.gz new file mode 100644 index 00000000000..2a38e3cc438 --- /dev/null +++ b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-0.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4863f500ab6be2e2c7444e947ebc5ff5339e159ea6df4df7dbf6e184bd53689 +size 5493 diff --git a/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-1.tar.gz b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-1.tar.gz new file mode 100644 index 00000000000..d0e476c62e4 --- /dev/null +++ b/src/test/resources/large/cnv_germline_workflows_test_files/wes-do-gc-gcnv-model-shard-1.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2390701f6503b068160176f29cb9f0b9c86ae90e95eb0710328ca2ddafbc341f +size 5663