diff --git a/scripts/variantstore/wdl/GvsCreateFilterSet.wdl b/scripts/variantstore/wdl/GvsCreateFilterSet.wdl index 407f8b37534..d5d8894bd08 100644 --- a/scripts/variantstore/wdl/GvsCreateFilterSet.wdl +++ b/scripts/variantstore/wdl/GvsCreateFilterSet.wdl @@ -293,7 +293,7 @@ task ExtractFilterTask { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_12" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:merge_master_to_ah_var_store_2023_07_18_9b2fbaf" memory: "7 GB" disks: "local-disk 10 HDD" bootDiskSizeGb: 15 @@ -355,7 +355,7 @@ task PopulateFilterSetSites { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_12" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:merge_master_to_ah_var_store_2023_07_18_9b2fbaf" memory: "3500 MB" disks: "local-disk 200 HDD" bootDiskSizeGb: 15 diff --git a/scripts/variantstore/wdl/GvsExtractCallset.wdl b/scripts/variantstore/wdl/GvsExtractCallset.wdl index 94c938dafe8..e9db7091501 100644 --- a/scripts/variantstore/wdl/GvsExtractCallset.wdl +++ b/scripts/variantstore/wdl/GvsExtractCallset.wdl @@ -354,7 +354,7 @@ task ExtractTask { echo ~{interval_index},${OUTPUT_FILE_DEST},${OUTPUT_FILE_BYTES},${OUTPUT_FILE_INDEX_DEST},${OUTPUT_FILE_INDEX_BYTES} >> manifest.txt >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_12" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:merge_master_to_ah_var_store_2023_07_18_9b2fbaf" memory: "12 GB" disks: "local-disk 150 HDD" bootDiskSizeGb: 15 diff --git a/scripts/variantstore/wdl/GvsImportGenomes.wdl b/scripts/variantstore/wdl/GvsImportGenomes.wdl index c022e7a041e..816120a466b 100644 --- a/scripts/variantstore/wdl/GvsImportGenomes.wdl +++ b/scripts/variantstore/wdl/GvsImportGenomes.wdl @@ -121,7 +121,7 @@ workflow GvsImportGenomes { load_data_maxretries = effective_load_data_maxretries, sample_names = read_lines(CreateFOFNs.vcf_sample_name_fofns[i]), sample_map = GetUningestedSampleIds.sample_map, - process_vcf_headers = process_vcf_headers + process_vcf_headers = process_vcf_headers, } } if (process_vcf_headers) { @@ -323,7 +323,7 @@ task LoadData { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_12" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:merge_master_to_ah_var_store_2023_07_18_9b2fbaf" maxRetries: load_data_maxretries memory: "3.75 GB" disks: "local-disk 50 HDD" diff --git a/scripts/variantstore/wdl/GvsUtils.wdl b/scripts/variantstore/wdl/GvsUtils.wdl index 711641c07b0..b0a1908f4ed 100644 --- a/scripts/variantstore/wdl/GvsUtils.wdl +++ b/scripts/variantstore/wdl/GvsUtils.wdl @@ -41,7 +41,7 @@ task MergeVCFs { } runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_12" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:merge_master_to_ah_var_store_2023_07_18_9b2fbaf" preemptible: select_first([preemptible_tries, 3]) memory: "3 GiB" disks: "local-disk ~{disk_size} HDD" @@ -127,7 +127,7 @@ task SplitIntervals { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_12" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:merge_master_to_ah_var_store_2023_07_18_9b2fbaf" bootDiskSizeGb: 15 memory: "~{disk_memory} GB" disks: "local-disk ~{disk_size} HDD" @@ -918,7 +918,7 @@ task PopulateFilterSetInfo { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_12" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:merge_master_to_ah_var_store_2023_07_18_9b2fbaf" memory: "3500 MB" disks: "local-disk 250 HDD" bootDiskSizeGb: 15 diff --git a/scripts/variantstore/wdl/GvsVQSRClassic.wdl b/scripts/variantstore/wdl/GvsVQSRClassic.wdl index c25128d9646..0478b94bf99 100644 --- a/scripts/variantstore/wdl/GvsVQSRClassic.wdl +++ b/scripts/variantstore/wdl/GvsVQSRClassic.wdl @@ -362,7 +362,7 @@ task GatherTranches { bootDiskSizeGb: 15 disks: "local-disk " + disk_size + " HDD" preemptible: 1 - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_12" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:merge_master_to_ah_var_store_2023_07_18_9b2fbaf" } output { @@ -565,7 +565,7 @@ task PopulateFilterSetTranches { >>> runtime { - docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:varstore_2023_07_12" + docker: "us.gcr.io/broad-dsde-methods/broad-gatk-snapshots:merge_master_to_ah_var_store_2023_07_18_9b2fbaf" memory: "3500 MB" disks: "local-disk 200 HDD" bootDiskSizeGb: 15