From e819249b0dfee0bb0db3a203ddef23536945b850 Mon Sep 17 00:00:00 2001 From: Karan Jaisingh Date: Thu, 26 Sep 2024 13:36:41 -0400 Subject: [PATCH] Cleared python syntax issues --- src/sv-pipeline/scripts/make_evidence_qc_table.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/sv-pipeline/scripts/make_evidence_qc_table.py b/src/sv-pipeline/scripts/make_evidence_qc_table.py index 575a89091..02f1473b6 100644 --- a/src/sv-pipeline/scripts/make_evidence_qc_table.py +++ b/src/sv-pipeline/scripts/make_evidence_qc_table.py @@ -203,7 +203,7 @@ def merge_evidence_qc_table( df_melt_insert_size = read_melt_insert_size(filename_melt_insert_size) # all data frames - dfs = [df_ploidy, df_sex_assignments, df_bincov_median, df_wgd_scores, df_non_diploid, + dfs = [df_ploidy, df_sex_assignments, df_bincov_median, df_wgd_scores, df_non_diploid, df_manta_high_outlier, df_melt_high_outlier, df_wham_high_outlier, df_total_high_outliers, df_manta_low_outlier, df_melt_low_outlier, df_wham_low_outlier, df_total_low_outliers, df_melt_insert_size] @@ -223,7 +223,7 @@ def main(): parser.add_argument( "-y", "--estimated-copy-number-filename", help="Sets the filename containing estimated copy numbers per contig.") - + parser.add_argument( "-x", "--sex-assignments-filename", help="Sets the filename containing copy number-based sex assignments.")