From 76be441005f5b277c3202bd7546f6e2abc1b5123 Mon Sep 17 00:00:00 2001
From: Vahid <VJalili@users.noreply.github.com>
Date: Thu, 16 Nov 2023 16:01:08 -0500
Subject: [PATCH] Setup automatic updates to WDLs on Dockstore (#605)

* Add .dockstore.yml.

* Update .dockstore.yml
---
 .github/.dockstore.yml | 163 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 163 insertions(+)
 create mode 100644 .github/.dockstore.yml

diff --git a/.github/.dockstore.yml b/.github/.dockstore.yml
new file mode 100644
index 000000000..a934e932b
--- /dev/null
+++ b/.github/.dockstore.yml
@@ -0,0 +1,163 @@
+version: 1.2
+workflows:
+  - subclass: WDL
+    name: GatherSampleEvidence
+    primaryDescriptorPath: /wdl/GatherSampleEvidence.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: EvidenceQC
+    primaryDescriptorPath: /wdl/EvidenceQC.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: TrainGCNV
+    primaryDescriptorPath: /wdl/TrainGCNV.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: GatherBatchEvidence
+    primaryDescriptorPath: /wdl/GatherBatchEvidence.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: ClusterBatch
+    primaryDescriptorPath: /wdl/ClusterBatch.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: GenerateBatchMetrics
+    primaryDescriptorPath: /wdl/GenerateBatchMetrics.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: FilterBatchSites
+    primaryDescriptorPath: /wdl/FilterBatchSites.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: PlotSVCountsPerSample
+    primaryDescriptorPath: /wdl/PlotSVCountsPerSample.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: FilterBatchSamples
+    primaryDescriptorPath: /wdl/FilterBatchSamples.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: MergeBatchSites
+    primaryDescriptorPath: /wdl/MergeBatchSites.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: GenotypeBatch
+    primaryDescriptorPath: /wdl/GenotypeBatch.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: RegenotypeCNVs
+    primaryDescriptorPath: /wdl/RegenotypeCNVs.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: CombineBatches
+    primaryDescriptorPath: /wdl/CombineBatches.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: ResolveComplexVariants
+    primaryDescriptorPath: /wdl/ResolveComplexVariants.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: GenotypeComplexVariants
+    primaryDescriptorPath: /wdl/GenotypeComplexVariants.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: CleanVcf
+    primaryDescriptorPath: /wdl/CleanVcf.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: MainVcfQc
+    primaryDescriptorPath: /wdl/MainVcfQc.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/
+
+  - subclass: WDL
+    name: AnnotateVcf
+    primaryDescriptorPath: /wdl/AnnotateVcf.wdl
+    filters:
+      branches: 
+        - main
+      tags:
+        - /.*/