diff --git a/website/docs/modules/train_gcnv.md b/website/docs/modules/train_gcnv.md index 30e27be72..652378dce 100644 --- a/website/docs/modules/train_gcnv.md +++ b/website/docs/modules/train_gcnv.md @@ -115,5 +115,12 @@ of the tool for a description on these optional inputs. ## Outputs +- `annotated_intervals` [Optional]. + Count files from [GatherSampleEvidence](./gse) with adjacent intervals combined into + locus-sorted `DepthEvidence` files using `GATK CondenseDepthEvidence` tool, which are + annotated with GC content, mappability, and segmental-duplication content using + [`GATK AnnotateIntervals`](https://gatk.broadinstitute.org/hc/en-us/articles/360041416652-AnnotateIntervals). + This output is generated if the optional input `do_explicit_gc_correction` is set to `True`. + - Contig ploidy model tarball - gCNV model tarballs \ No newline at end of file