diff --git a/.github/workflows/sv_pipeline_docker.yml b/.github/workflows/sv_pipeline_docker.yml index c381e9f9b..0f8cb7147 100644 --- a/.github/workflows/sv_pipeline_docker.yml +++ b/.github/workflows/sv_pipeline_docker.yml @@ -209,14 +209,14 @@ jobs: python ./scripts/docker/build_docker.py \ --base-git-commit ${{ needs.build_args_job.outputs.base_sha }} \ --current-git-commit ${{ needs.build_args_job.outputs.head_sha }} \ - --docker-repo us.gcr.io/${{ secrets.GCP_PROJECT_ID }}/gatk-sv \ + --docker-repo ${{ secrets.AZ_CR }} us.gcr.io/${{ secrets.GCP_PROJECT_ID }}/gatk-sv \ --image-tag ${{ needs.build_args_job.outputs.image_tag }} \ --input-json $DOCKERS_AZURE $DOCKERS_GCP \ --output-json $DOCKERS_AZURE $DOCKERS_GCP \ --disable-git-protect CHANGED=$(git diff --quiet $DOCKERS_GCP || echo True) - echo "::set-output name=CHANGED::$CHANGED" + echo "CHANGED=$CHANGED" >> $GITHUB_OUTPUT - name: Commit Changes to dockers_*.json if: steps.build_and_publish.outputs.CHANGED diff --git a/inputs/values/dockers.json b/inputs/values/dockers.json index 4cffa8b4d..93046b0e4 100644 --- a/inputs/values/dockers.json +++ b/inputs/values/dockers.json @@ -13,7 +13,7 @@ "sv_base_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-base:2023-02-01-v0.26.8-beta-9b25c72d", "sv_base_mini_docker": "us.gcr.io/broad-dsde-methods/vjalili/sv-base-mini:5994670", "sv_pipeline_base_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665", - "sv_pipeline_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665", + "sv_pipeline_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-06-27-v0.27.3-beta-0be9cf8a", "sv_pipeline_hail_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665", "sv_pipeline_updates_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665", "sv_pipeline_qc_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665", diff --git a/inputs/values/dockers_azure.json b/inputs/values/dockers_azure.json index 4b7aed7a8..dcc888dcb 100644 --- a/inputs/values/dockers_azure.json +++ b/inputs/values/dockers_azure.json @@ -13,7 +13,7 @@ "sv_base_docker": "vahid.azurecr.io/gatk-sv/sv-base:2023-02-01-v0.26.8-beta-9b25c72d", "sv_base_mini_docker": "vahid.azurecr.io/vjalili/sv-base-mini:5994670", "sv_pipeline_base_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665", - "sv_pipeline_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665", + "sv_pipeline_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-06-27-v0.27.3-beta-0be9cf8a", "sv_pipeline_hail_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665", "sv_pipeline_updates_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665", "sv_pipeline_qc_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-05-24-v0.27.3-beta-1796b665",