diff --git a/inputs/values/dockers.json b/inputs/values/dockers.json index 5b346c293..adc13f3bb 100644 --- a/inputs/values/dockers.json +++ b/inputs/values/dockers.json @@ -1,6 +1,6 @@ { "name": "dockers", - "cnmops_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/cnmops:2023-02-01-v0.26.8-beta-9b25c72d", + "cnmops_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/cnmops:2023-07-28-v0.28.1-beta-e70dfbd7", "condense_counts_docker": "us.gcr.io/broad-dsde-methods/tsharpe/gatk:4.2.6.1-57-g9e03432", "gatk_docker": "us.gcr.io/broad-dsde-methods/markw/gatk:2023-07-13-4.4.0.0-43-gd79823f9c-NIGHTLY-SNAPSHOT", "gatk_docker_pesr_override": "us.gcr.io/broad-dsde-methods/tsharpe/gatk:4.2.6.1-57-g9e03432", @@ -9,16 +9,16 @@ "manta_docker": "us.gcr.io/broad-dsde-methods/vjalili/manta:5994670", "melt_docker": "us.gcr.io/talkowski-sv-gnomad/melt:3159ce1", "scramble_docker": "us.gcr.io/broad-dsde-methods/tsharpe/scramble:1.0.2", - "samtools_cloud_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/samtools-cloud:2023-02-01-v0.26.8-beta-9b25c72d", - "sv_base_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-base:2023-02-01-v0.26.8-beta-9b25c72d", + "samtools_cloud_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/samtools-cloud:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_base_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-base:2023-07-28-v0.28.1-beta-e70dfbd7", "sv_base_mini_docker": "us.gcr.io/broad-dsde-methods/vjalili/sv-base-mini:5994670", - "sv_pipeline_base_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_hail_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_updates_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_qc_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_rdtest_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "wham_docker": "us.gcr.io/broad-dsde-methods/tsharpe/wham:f07f24a", + "sv_pipeline_base_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_hail_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_updates_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_qc_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_rdtest_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "wham_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/wham:2023-07-28-v0.28.1-beta-e70dfbd7", "igv_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/igv:mw-xz-fixes-2-b1be6a9", "duphold_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/duphold:mw-xz-fixes-2-b1be6a9", "vapor_docker": "us.gcr.io/broad-dsde-methods/eph/vapor:header-hash-2fc8f12", @@ -29,7 +29,7 @@ "sv-pipeline-virtual-env": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline-virtual-env:2023-05-15-v0.27.3-beta-a252f306", "samtools-cloud-virtual-env": "us.gcr.io/broad-dsde-methods/vjalili/samtools-cloud-virtual-env:5994670", "sv-utils-env": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-utils-env:2023-02-01-v0.26.8-beta-9b25c72d", - "sv_utils_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-utils:2023-03-16-v0.27-beta-906c6272", + "sv_utils_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-utils:2023-07-28-v0.28.1-beta-e70dfbd7", "gq_recalibrator_docker": "us.gcr.io/broad-dsde-methods/markw/gatk:mw-tb-form-sv-filter-training-data-899360a", "str": "us.gcr.io/broad-dsde-methods/gatk-sv/str:2023-05-23-v0.27.3-beta-e537bdd6" } \ No newline at end of file diff --git a/inputs/values/dockers_azure.json b/inputs/values/dockers_azure.json index 63b2ca608..d40f17a2d 100644 --- a/inputs/values/dockers_azure.json +++ b/inputs/values/dockers_azure.json @@ -1,6 +1,6 @@ { "name": "dockers", - "cnmops_docker": "vahid.azurecr.io/gatk-sv/cnmops:2023-02-01-v0.26.8-beta-9b25c72d", + "cnmops_docker": "vahid.azurecr.io/gatk-sv/cnmops:2023-07-28-v0.28.1-beta-e70dfbd7", "condense_counts_docker": "vahid.azurecr.io/tsharpe/gatk:4.2.6.1-57-g9e03432", "gatk_docker": "vahid.azurecr.io/markw/gatk:2023-07-13-4.4.0.0-43-gd79823f9c-NIGHTLY-SNAPSHOT", "gatk_docker_pesr_override": "vahid.azurecr.io/tsharpe/gatk:4.2.6.1-57-g9e03432", @@ -9,16 +9,16 @@ "manta_docker": "vahid.azurecr.io/vjalili/manta:5994670", "melt_docker": "vahid.azurecr.io/melt:vj-4ff9de9f", "scramble_docker": "vahid.azurecr.io/tsharpe/scramble:1.0.2", - "samtools_cloud_docker": "vahid.azurecr.io/gatk-sv/samtools-cloud:2023-02-01-v0.26.8-beta-9b25c72d", - "sv_base_docker": "vahid.azurecr.io/gatk-sv/sv-base:2023-02-01-v0.26.8-beta-9b25c72d", + "samtools_cloud_docker": "vahid.azurecr.io/gatk-sv/samtools-cloud:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_base_docker": "vahid.azurecr.io/gatk-sv/sv-base:2023-07-28-v0.28.1-beta-e70dfbd7", "sv_base_mini_docker": "vahid.azurecr.io/vjalili/sv-base-mini:5994670", - "sv_pipeline_base_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_hail_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_updates_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_qc_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "sv_pipeline_rdtest_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-26-v0.28.1-beta-6ead40fc", - "wham_docker": "vahid.azurecr.io/vjalili/wham:5994670", + "sv_pipeline_base_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_hail_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_updates_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_qc_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "sv_pipeline_rdtest_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2023-07-28-v0.28.1-beta-e70dfbd7", + "wham_docker": "vahid.azurecr.io/gatk-sv/wham:2023-07-28-v0.28.1-beta-e70dfbd7", "igv_docker": "vahid.azurecr.io/gatk-sv/igv:mw-xz-fixes-2-b1be6a9", "duphold_docker": "vahid.azurecr.io/gatk-sv/duphold:mw-xz-fixes-2-b1be6a9", "vapor_docker": "vahid.azurecr.io/eph/vapor:header-hash-2fc8f12", @@ -29,7 +29,7 @@ "sv-pipeline-virtual-env": "vahid.azurecr.io/gatk-sv/sv-pipeline-virtual-env:2023-05-15-v0.27.3-beta-a252f306", "samtools-cloud-virtual-env": "vahid.azurecr.io/vjalili/samtools-cloud-virtual-env:5994670", "sv-utils-env": "vahid.azurecr.io/gatk-sv/sv-utils-env:2023-02-01-v0.26.8-beta-9b25c72d", - "sv_utils_docker": "vahid.azurecr.io/gatk-sv/sv-utils:2023-03-16-v0.27-beta-906c6272", + "sv_utils_docker": "vahid.azurecr.io/gatk-sv/sv-utils:2023-07-28-v0.28.1-beta-e70dfbd7", "gq_recalibrator_docker": "vahid.azurecr.io/markw/gatk:mw-tb-form-sv-filter-training-data-899360a", "str": "vahid.azurecr.io/gatk-sv/str:2023-05-23-v0.27.3-beta-e537bdd6" } \ No newline at end of file