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Warning

This repository is deprecated. Use terra-tools instead.

Tools for use with FireCloud

To run a given script using the run script:

  • ./run.sh scripts/directory/script_name.py <arguments>

To run a giving script using Docker:

  • docker run --rm -it -v "$HOME"/.config:/.config broadinstitute/firecloud-tools python /scripts/<script name.py> <arguments>

Prerequisites

When running without the run script or docker, check the packages that are pip installed in either run.sh or the Dockerfile.