Arguments mixed up in nextflow run

[biggstd]

I prepared a sample input folder:

input\
  osativa.emx.colnames.txt  
  osativa.emx.npy 
  osativa.emx.rownames.txt  
  osativa.labels.txt

Using the gene-oracle nextflow workflow (with the conda image) I get the following (abbreviated) error:

taskset -c 0-1 phase1-evaluate.py 			
--dataset      osativa.labels.txt 			
--labels       osativa.emx.colnames.txt osativa.emx.npy osativa.emx.rownames.txt 			
--model-config /home/tyler/.nextflow/assets/systemsgenetics/gene-oracle/example/models.json 			
--model        lr 			
--random 			
--random-range $START $STOP $STEP 			
--random-iters 10 			
--outfile      $(printf "%04d" 6).log


usage: phase1-evaluate.py [-h] --dataset DATASET --labels LABELS --model-config MODEL_CONFIG [--model MODEL] [--outfile OUTFILE] [--gene-sets GENE_SETS] [--full] [--random]
                            [--random-range START STOP STEP] [--random-iters RANDOM_ITERS] [--n-jobs N_JOBS] [--cv CV]

phase1-evaluate.py: error: unrecognized arguments: osativa.emx.npy osativa.emx.rownames.txt

It seems the filenames are not quite getting assigned to their correct place in this instance.

Edit:

Perhaps I need the geneset.txt file. I may have misunderstood what running the pipeline without that file would do.