New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

After import refactor ion channels so that permeability/conductance is the output port not current #10

Open

tclose opened this issue Oct 8, 2014 · 1 comment

Labels

enhancement HOC importer NEURON

Milestone

Contributor

tclose commented Oct 8, 2014

Issue by tclose
Wednesday Sep 17, 2014 at 07:51 GMT
Originally opened as https://github.com/tclose/NineLine/issues/15

tclose added enhancement NEURON importer labels

Contributor Author

tclose commented Oct 27, 2014

This will first require using a maths package like Sympy to parse the inline maths and factor out the conductance from the current equations.
Then it will be a matter of grouping channels by common ion permeability
- Create a ion-pool component for each ion type
- Link up the ports of each ion-channel component to its corresponding ion-pool

tclose added importer HOC NEURON and removed NEURON importer labels

tclose modified the milestone: v0.2

tclose modified the milestones: v0.4, Long Term

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment