DEV.md

dev docs

Init

Overall environment

docker-compose up -d

analysis environment

cd analysis
conda env create -f environment.yml
conda activate phenotype-mapping
python -m pip install -e .
cd .. # back to root
cd common_funcs
python -m pip install -e .
cd ...
python -m mypy --install-types

# verify state of setup
python -m pytest tests/test_init.py

env vars