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[BUG]: Locally reading the VCF file and online reading/extraction of the number of SNPs based on ID have differences. #553

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M-jk22 opened this issue Aug 14, 2024 · 0 comments
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M-jk22 commented Aug 14, 2024

When I download the VCF file locally via Open GWAS and then read it using the readVcf function, the number of SNPs extracted using the extract_outcome_data function (with snps=exposure_dat$SNP, outcomes=outcomeID) differs significantly. I have meticulously cross-checked the data, but the reason for the discrepancy remains unclear, for instance, in the case of ukb-b-6353.

@M-jk22 M-jk22 added the bug label Aug 14, 2024
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