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[BUG]: persistent mv_extract_exposures_local() bug #520

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bluscrubs opened this issue May 23, 2024 · 1 comment
Open

[BUG]: persistent mv_extract_exposures_local() bug #520

bluscrubs opened this issue May 23, 2024 · 1 comment
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@bluscrubs
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bluscrubs commented May 23, 2024

Describe the bug (required)

It seems this bug has been described and fixed previously in 0.5.10 (#235, #264), but I'm finding the same issue with v0.6.2
mv_extract_exposures_local() returns "Error in format_data(as.data.frame(outcome_dat), type = "outcome", snps = snps, :
None of the specified columns present" like before.

Describe the current behaviour you observe (required)

when using the mv_extract_exposures_local() function, it seems to read in the files fine, but tries looking for a outcome column, which doesn't exist.

mv_extract_exposures_local(c("/exposure1sumstats.txt", "/exposure2sumstats.txt"))

WARNING: Experimental function
==================================================
--------------------------------------------------
==================================================
Error in format_data(as.data.frame(outcome_dat), type = "outcome", snps = snps, :
None of the specified columns present

Any help would be appreciated!

@bluscrubs bluscrubs added the bug label May 23, 2024
@bluscrubs bluscrubs changed the title [BUG]: [BUG]: persistent mv_extract_exposures_local() bug May 23, 2024
@jiachenchen322
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Hello, have you figured out how to solve this issue? Could you please provide any guidance? Thanks!

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