README.md

IST Group Seminar: Neuroinformatics (Kamitani lab)

Course materials for IST Group Seminar: Neuroinformatics (Kamitani lab).

Textbooks and video lectures

See learning_materials.md.

Code

Setup

You can run the IPython notebooks in your local environment or on Google Colab.

Local run:

Please clone this repository and install the following packages. If you are using Pipenv, you can setup the environment with the Pipfile in this repository.

• bdpy
• h5py
• hdf5storage
• ipython
• jupyter
• jupyterlab
• matplotlib
• nibabel
• nipy
• numpy
• pyyaml
• scikit-learn
• scipy
• tqdm

Google Colab:

You can run the notebooks on Google Colab. Please click [Google Colab] to open each notebook on Google Colab.

Notebooks

• 0_env_check.ipynb [Google Colab]
• 1_mri_images.ipynb [Google Colab]
• 2_glm.ipynb [Google Colab]
• 3_decoding_classification.ipynb [Google Colab]
• Data of the main experiment (ist_seminar_2024_main_data.ipynb) [Google Colab]