From 9b0df6956f65f47f5ff3c52e4cce57877fbc359e Mon Sep 17 00:00:00 2001
From: Joon Klaps <61584065+Joon-Klaps@users.noreply.github.com>
Date: Thu, 6 Jul 2023 09:19:35 +0000
Subject: [PATCH] Removing tracedir and devcontainer update

---
 .devcontainer/devcontainer.json | 2 ++
 conf/test.config                | 1 -
 conf/test_full.config           | 1 -
 3 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
index a92127e1..99d04111 100644
--- a/.devcontainer/devcontainer.json
+++ b/.devcontainer/devcontainer.json
@@ -32,6 +32,8 @@
         }
     },
 
+    "postCreateCommand": "pre-commit install --install-hooks && nextflow self-update",
+
     "features": {
         "docker-in-docker": {
             "version": "latest",
diff --git a/conf/test.config b/conf/test.config
index 962afaaf..ede460c8 100644
--- a/conf/test.config
+++ b/conf/test.config
@@ -22,7 +22,6 @@ params {
     // Input data
     input     = "${projectDir}/assets/samplesheet.csv"
     outdir    = "testing"
-    tracedir  = "${params.outdir}/pipeline_info"
 
     host_genome = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
     skip_complexity_filtering   = false
diff --git a/conf/test_full.config b/conf/test_full.config
index d69a72d4..9c96ca83 100644
--- a/conf/test_full.config
+++ b/conf/test_full.config
@@ -24,7 +24,6 @@ params {
     // Input data
     input     = 'https://raw.githubusercontent.com/nf-core/test-datasets/viralrecon/samplesheet/v2.6/samplesheet_test_metagenomic_illumina.csv'
     outdir    = "testing"
-    tracedir  = "${params.outdir}/pipeline_info"
 
     host_genome = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
     skip_complexity_filtering   = false