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When using jbrowse make-pif --csi it takes a few minutes with most going into the sort|bgzip command
jbrowse make-pif --csi
We could provide options to speed up
--tmpdir
--buffer-size 2G
--threads
This is for @jbrowse/cli/2.15.1 linux-x64 node-v20.16.0
@jbrowse/cli/2.15.1 linux-x64 node-v20.16.0
The text was updated successfully, but these errors were encountered:
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When using
jbrowse make-pif --csi
it takes a few minutes with most going into the sort|bgzip commandWe could provide options to speed up
--tmpdir
the tmp directory for sort (-T) (e.g. user could provide /dev/shm)--buffer-size 2G
.--threads
(as not all sort implementations have a parallel option)This is for
@jbrowse/cli/2.15.1 linux-x64 node-v20.16.0
The text was updated successfully, but these errors were encountered: