README.md

MyND: My Neuro Detector

My Neuro Detector (MyND) is a project that attempts to characterize focus and predict distraction states through scalp EEG.
Project Writeup

EEG Details

OpenBCI Cyton:

Pin	Location	Function
Bias	Fpz	Ground
N8P	Fp1	EEG Left Forehead Channel
N7P	Fp2	EEG Right Forehead Channel
N2P	HEOG (left)	Saccade Detection
N1P	VEOG (left)	Blink Detection
SRB	Earclip (right)	Reference

EEG, EyeTracker, and PsychoPy Marker streams --> XDF

Project Tools

1. PsychoPy
2. Webgazer.js
   
   • A decorated version was used to collect data for this project. See webgazerListener.js
3. OpenBCI Cyton Board V3

Project Versions

• V2.0.1 : Added marker bounds for calibration period.
• V2.0.0 : Reorganized data analysis pipeline. Updated calibration period strings and meme frequency. Short experiment is now similar length as long.
• V1.0.0 : Updated distractor, added memorization aid, and implemented 3 experiment sections. Usable Markers implemented.
• V0.1.2 : Includes Psychopy, Calibration, OpenBCI, and EyeTracker
• V0.1.1 : Includes Psychopy, OpenBCI, and EyeTracker
• V0.1.0 : Includes Psychopy and OpenBCI
• V0.0.1 : NeuroSky data collection, data analysis

Data Analysis

• 00 notebook: Data Check and Filtering -> filtered_cleaned_data
• 01 notebook: Create Data Frame -> df
• 02 notebooks: ERPs, Power Bins, PSD Analysis, FOOOF Analysis, Power By Time
• 03 notebooks: Focus Modeling

Usage

• PsychoPy + OpenBCI Recording
  • python3 recordEEG.py
  • python3 PsychoRun.py
  • Run LabRecorder
  • Select the EEG and Markers stream to record. Edit the save-as file name or change the filename later as desired.
• Eye tracker
  • python3 eyeTrackerSocket_Server.py
  • node app.js
  • go to localhost:3000/index.html

References

Webgazer

• Alexandra Papoutsaki and Patsorn Sangkloy and James Laskey and Nediyana Daskalova and Jeff Huang and James Hays (2016). WebGazer: Scalable Webcam Eye Tracking Using User Interactions. Proceedings of the 25th International Joint Conference on Artificial Intelligence (IJCAI). https://webgazer.cs.brown.edu/

Neurodsp

• Cole, S., Donoghue, T., Gao, R., & Voytek, B. (2019). NeuroDSP: A package for neural digital signal processing. Journal of Open Source Software, 4(36), 1272. https://doi.org/10.21105/joss.01272

Fitting Oscillations & One Over F (FOOOF)

• Haller M, Donoghue T, Peterson E, Varma P, Sebastian P, Gao R, Noto T, Knight RT, Shestyuk A, Voytek B (2018) Parameterizing Neural Power Spectra. bioRxiv, 299859. doi: https://doi.org/10.1101/299859

de Sa Lab: Ollie's Seg Speller Offline Processing

• https://github.com/ollie-d/SegSpeller/blob/master/Offline%20Processing.ipynb

artifact rejection with ICA

• https://sccn.ucsd.edu/~jung/Site/EEG_artifact_removal.html

Article Sources

• https://sapienlabs.org/finding-an-alternative-to-connectionism/
• https://iopscience.iop.org/article/10.1088/1741-2552/ab355c/meta
• https://link.springer.com/article/10.1186/s13634-015-0251-9
• https://en.wikipedia.org/wiki/Digital_signal_processing
• https://en.wikipedia.org/wiki/Electroencephalography
• https://neurofantastic.com/
• https://waitbutwhy.com/

Image Sources

• https://cleanmemes.com/
• https://www.reddit.com/r/memes/