From a18b6e72b41eaa600af6bb7809e8ebc875859283 Mon Sep 17 00:00:00 2001
From: prabhu <prabhu@appthreat.com>
Date: Wed, 23 Aug 2023 15:16:21 +0100
Subject: [PATCH] Scala SBT dependency tree (#483)

* Scala SBT dependency tree

Signed-off-by: Prabhu Subramanian <prabhu@appthreat.com>

Support for specifying project types as gradle or scala for mixed projects. Filter project and target directories for scala projects

Signed-off-by: Prabhu Subramanian <prabhu@appthreat.com>

* Improved project filtering

Signed-off-by: Prabhu Subramanian <prabhu@appthreat.com>

* Bump version

Signed-off-by: Prabhu Subramanian <prabhu@appthreat.com>

---------

Signed-off-by: Prabhu Subramanian <prabhu@appthreat.com>
---
 ADVANCED.md                 |    4 +
 README.md                   |    1 +
 index.js                    |   90 +-
 package-lock.json           |    4 +-
 package.json                |    2 +-
 test/data/atom-sbt-list.txt |  174 +-
 test/data/atom-sbt-tree.txt | 6947 ++++++++++++++++++++++++-----------
 utils.js                    |  168 +-
 utils.test.js               |   11 +-
 9 files changed, 5213 insertions(+), 2188 deletions(-)

diff --git a/ADVANCED.md b/ADVANCED.md
index d12d5cffe..53b989b74 100644
--- a/ADVANCED.md
+++ b/ADVANCED.md
@@ -126,3 +126,7 @@ Below are some example commands to create an SBoM for a spring application and p
 ### REPL History
 
 Repl history will get persisted under `$HOME/.config/.cdxgen` directory. To override this location, use the environment variable `CDXGEN_REPL_HISTORY`.
+
+## Mixed Java Projects
+
+If a java project use both maven and gradle, maven is selected for SBoM generation under default settings. To force cdxgen to use gradle, use the argument `-t gradle`. Similarly, use `-t scala` for scala SBT.
diff --git a/README.md b/README.md
index 8f53f56b9..af306b9c1 100644
--- a/README.md
+++ b/README.md
@@ -282,6 +282,7 @@ cdxgen can retain the dependency tree under the `dependencies` attribute for a s
 - pnpm-lock.yaml
 - Maven (pom.xml)
 - Gradle
+- Scala SBT
 - Python (requirements.txt, setup.py, pyproject.toml, poetry.lock)
 
 ## Environment variables
diff --git a/index.js b/index.js
index 1df3593b0..c020b43a1 100644
--- a/index.js
+++ b/index.js
@@ -41,7 +41,6 @@ import {
   determineSbtVersion,
   addPlugin,
   cleanupPlugin,
-  parseKVDep,
   parsePkgJson,
   parseMinJs,
   parseBowerJson,
@@ -94,7 +93,8 @@ import {
   parseCsProjData,
   DEBUG_MODE,
   parsePyProjectToml,
-  addEvidenceForImports
+  addEvidenceForImports,
+  parseSbtTree
 } from "./utils.js";
 import { spawnSync } from "node:child_process";
 import { fileURLToPath } from "node:url";
@@ -380,7 +380,6 @@ function addMetadata(parentComponent = {}, format = "xml", options = {}) {
           }
         }
       } // for
-      parentComponent.components = subComponents;
     }
     if (format === "json") {
       metadata.component = parentComponent;
@@ -1123,7 +1122,12 @@ export const createJavaBom = async (path, options) => {
       path,
       (options.multiProject ? "**/" : "") + "pom.xml"
     );
-    if (pomFiles && pomFiles.length) {
+    let bomJsonFiles = [];
+    if (
+      pomFiles &&
+      pomFiles.length &&
+      !["scala", "sbt", "gradle"].includes(options.projectType)
+    ) {
       const cdxMavenPlugin =
         process.env.CDX_MAVEN_PLUGIN ||
         "org.cyclonedx:cyclonedx-maven-plugin:2.7.9";
@@ -1174,7 +1178,11 @@ export const createJavaBom = async (path, options) => {
         });
         // Check if the cyclonedx plugin created the required bom.xml file
         // Sometimes the plugin fails silently for complex maven projects
-        const bomJsonFiles = getAllFiles(path, "**/target/*.json");
+        bomJsonFiles = getAllFiles(path, "**/target/*.json");
+        // Check if the bom json files got created in a directory other than target
+        if (!bomJsonFiles.length) {
+          bomJsonFiles = getAllFiles(path, "**/bom*.json");
+        }
         const bomGenerated = bomJsonFiles.length;
         if (!bomGenerated || result.status !== 0 || result.error) {
           const tempDir = mkdtempSync(join(tmpdir(), "cdxmvn-"));
@@ -1255,7 +1263,6 @@ export const createJavaBom = async (path, options) => {
         }
       } // for
       const bomFiles = getAllFiles(path, "**/target/bom.xml");
-      const bomJsonFiles = getAllFiles(path, "**/target/*.json");
       for (const abjson of bomJsonFiles) {
         let bomJsonObj = undefined;
         try {
@@ -1323,7 +1330,11 @@ export const createJavaBom = async (path, options) => {
     const allProjectsAddedPurls = [];
     const rootDependsOn = [];
     // Execute gradle properties
-    if (gradleFiles && gradleFiles.length) {
+    if (
+      gradleFiles &&
+      gradleFiles.length &&
+      !["scala", "sbt"].includes(options.projectType)
+    ) {
       let retMap = executeGradleProperties(path, null, null);
       const allProjectsStr = retMap.projects || [];
       const rootProject = retMap.rootProject;
@@ -1391,7 +1402,12 @@ export const createJavaBom = async (path, options) => {
         });
       }
     }
-    if (gradleFiles && gradleFiles.length && options.installDeps) {
+    if (
+      gradleFiles &&
+      gradleFiles.length &&
+      options.installDeps &&
+      !["scala", "sbt"].includes(options.projectType)
+    ) {
       const gradleCmd = getGradleCommand(path, null);
       const defaultDepTaskArgs = ["-q", "--console", "plain", "--build-cache"];
       allProjects.push(parentComponent);
@@ -1508,7 +1524,11 @@ export const createJavaBom = async (path, options) => {
     // Bazel
     // Look for the BUILD file only in the root directory
     const bazelFiles = getAllFiles(path, "BUILD");
-    if (bazelFiles && bazelFiles.length) {
+    if (
+      bazelFiles &&
+      bazelFiles.length &&
+      !["scala", "sbt"].includes(options.projectType)
+    ) {
       let BAZEL_CMD = "bazel";
       if (process.env.BAZEL_HOME) {
         BAZEL_CMD = join(process.env.BAZEL_HOME, "bin", "bazel");
@@ -1618,9 +1638,10 @@ export const createJavaBom = async (path, options) => {
         sbtProjects = sbtProjects.concat(baseDir);
       }
     }
-
-    sbtProjects = [...new Set(sbtProjects)]; // eliminate duplicates
-
+    // eliminate duplicates and ignore project directories
+    sbtProjects = [...new Set(sbtProjects)].filter(
+      (p) => !p.endsWith(sep + "project") && !p.includes("target" + sep)
+    );
     const sbtLockFiles = getAllFiles(
       path,
       (options.multiProject ? "**/" : "") + "build.sbt.lock"
@@ -1667,18 +1688,9 @@ export const createJavaBom = async (path, options) => {
           }
         }
         writeFileSync(tempSbtPlugins, sbtPluginDefinition);
-
         for (const i in sbtProjects) {
           const basePath = sbtProjects[i];
           const dlFile = join(tempDir, "dl-" + i + ".tmp");
-          console.log(
-            "Executing",
-            SBT_CMD,
-            "dependencyList in",
-            basePath,
-            "using plugins",
-            tempSbtgDir
-          );
           let sbtArgs = [];
           let pluginFile = null;
           if (standalonePluginFile) {
@@ -1689,12 +1701,25 @@ export const createJavaBom = async (path, options) => {
           } else {
             // write to the existing plugins file
             if (useSlashSyntax) {
-              sbtArgs = [`"dependencyList / toFile ${dlFile} --force"`];
+              sbtArgs = [
+                `'set asciiGraphWidth := 400' "dependencyTree / toFile ${dlFile} --force"`
+              ];
             } else {
-              sbtArgs = [`"dependencyList::toFile ${dlFile} --force"`];
+              sbtArgs = [
+                `'set asciiGraphWidth := 400' "dependencyTree::toFile ${dlFile} --force"`
+              ];
             }
             pluginFile = addPlugin(basePath, sbtPluginDefinition);
           }
+          console.log(
+            "Executing",
+            SBT_CMD,
+            sbtArgs.join(" "),
+            "in",
+            basePath,
+            "using plugins",
+            tempSbtgDir
+          );
           // Note that the command has to be invoked with `shell: true` to properly execut sbt
           const result = spawnSync(SBT_CMD, sbtArgs, {
             cwd: basePath,
@@ -1719,10 +1744,21 @@ export const createJavaBom = async (path, options) => {
             cleanupPlugin(basePath, pluginFile);
           }
           if (existsSync(dlFile)) {
-            const cmdOutput = readFileSync(dlFile, { encoding: "utf-8" });
-            const dlist = parseKVDep(cmdOutput);
-            if (dlist && dlist.length) {
-              pkgList = pkgList.concat(dlist);
+            const retMap = parseSbtTree(dlFile);
+            if (retMap.pkgList && retMap.pkgList.length) {
+              const tmpParentComponent = retMap.pkgList.splice(0, 1)[0];
+              tmpParentComponent.type = "application";
+              pkgList = pkgList.concat(retMap.pkgList);
+              if (!parentComponent || !Object.keys(parentComponent).length) {
+                parentComponent = tmpParentComponent;
+              }
+            }
+            if (retMap.dependenciesList) {
+              dependencies = mergeDependencies(
+                dependencies,
+                retMap.dependenciesList,
+                parentComponent
+              );
             }
           } else {
             if (options.failOnError || DEBUG_MODE) {
diff --git a/package-lock.json b/package-lock.json
index eab89a3fc..a332e73c2 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -1,12 +1,12 @@
 {
   "name": "@cyclonedx/cdxgen",
-  "version": "9.5.0",
+  "version": "9.6.0",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "@cyclonedx/cdxgen",
-      "version": "9.5.0",
+      "version": "9.6.0",
       "license": "Apache-2.0",
       "dependencies": {
         "@babel/parser": "^7.22.10",
diff --git a/package.json b/package.json
index aa98309c1..07f13ee58 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@cyclonedx/cdxgen",
-  "version": "9.5.0",
+  "version": "9.6.0",
   "description": "Creates CycloneDX Software Bill-of-Materials (SBOM) from source or container image",
   "homepage": "http://github.com/cyclonedx/cdxgen",
   "author": "Prabhu Subramanian <prabhu@appthreat.com>",
diff --git a/test/data/atom-sbt-list.txt b/test/data/atom-sbt-list.txt
index 979619000..00ec62f8f 100644
--- a/test/data/atom-sbt-list.txt
+++ b/test/data/atom-sbt-list.txt
@@ -2,99 +2,125 @@ au.com.bytecode:opencsv:2.4
 ca.mcgill.sable:jasmin:3.0.3
 ca.mcgill.sable:java_cup:0.9.2
 ca.mcgill.sable:polyglot:2006
-com.chuusai:shapeless_2.13:2.3.10
 com.diffplug.spotless:spotless-eclipse-base:3.5.2
 com.diffplug.spotless:spotless-eclipse-cdt:10.5.0
-com.fasterxml.jackson.core:jackson-annotations:2.14.2
-com.fasterxml.jackson.core:jackson-core:2.14.2
-com.fasterxml.jackson.core:jackson-databind:2.14.2
-com.github.pathikrit:better-files_2.13:3.9.2
-com.github.scopt:scopt_2.13:4.1.0
-com.github.tototoshi:scala-csv_2.13:1.3.10
+com.fasterxml.jackson.core:jackson-annotations:2.15.2
+com.fasterxml.jackson.core:jackson-core:2.15.2
+com.fasterxml.jackson.core:jackson-databind:2.15.2
+com.github.javaparser:javaparser-core:3.25.4
+com.github.javaparser:javaparser-symbol-solver-core:3.25.4
+com.github.luben:zstd-jni:1.5.4-2
+com.github.pathikrit:better-files_3:3.9.2
+com.github.plokhotnyuk.jsoniter-scala:jsoniter-scala-core_2.13:2.13.5.2
+com.github.scopt:scopt_3:4.1.0
+com.github.tototoshi:scala-csv_3:1.3.10
 com.google.code.findbugs:jsr305:3.0.2
 com.google.code.gson:gson:2.8.9
-com.google.errorprone:error_prone_annotations:2.11.0
+com.google.errorprone:error_prone_annotations:2.18.0
 com.google.guava:failureaccess:1.0.1
-com.google.guava:guava:31.1-jre
+com.google.guava:guava:32.1.1-jre
 com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict-with-guava
-com.google.j2objc:j2objc-annotations:1.3
+com.google.j2objc:j2objc-annotations:2.8
 com.google.protobuf:protobuf-java:3.21.7
 com.google.protobuf:protobuf-java-util:3.21.2
 com.h2database:h2-mvstore:1.4.200
-com.ibm.icu:icu4j:72.1
-com.lihaoyi:geny_2.13:0.7.1
-com.lihaoyi:ujson_2.13:2.0.0
-com.lihaoyi:upack_2.13:2.0.0
-com.lihaoyi:upickle-core_2.13:2.0.0
-com.lihaoyi:upickle-implicits_2.13:2.0.0
-com.lihaoyi:upickle_2.13:2.0.0
+com.lihaoyi:fansi_3:0.4.0
+com.lihaoyi:geny_3:1.0.0
+com.lihaoyi:mainargs_3:0.5.0
+com.lihaoyi:pprint_3:0.8.1
+com.lihaoyi:sourcecode_3:0.3.0
+com.lihaoyi:ujson_3:3.1.2
+com.lihaoyi:upack_3:3.1.2
+com.lihaoyi:upickle-core_3:3.1.2
+com.lihaoyi:upickle-implicits_3:3.1.2
+com.lihaoyi:upickle_3:3.1.2
 com.massisframework:j-text-utils:0.3.4
+com.michaelpollmeier:scala-repl-pp-core_3:0.1.36
+com.michaelpollmeier:scala-repl-pp-shaded-libs_3:0.1.36
 com.michaelpollmeier:versionsort:1.0.11
 com.sun.istack:istack-commons-runtime:3.0.7
 com.sun.xml.fastinfoset:FastInfoset:1.2.15
 com.thoughtworks.paranamer:paranamer:2.8
 com.typesafe:config:1.4.2
-commons-io:commons-io:2.7
+commons-io:commons-io:2.11.0
 commons-lang:commons-lang:2.6
 de.upb.cs.swt:axml:2.1.3
 de.upb.cs.swt:heros:1.2.3
-io.appthreat:atom_2.13:1.0.0
-io.circe:circe-core_2.13:0.14.5
-io.circe:circe-generic_2.13:0.14.5
-io.circe:circe-jawn_2.13:0.14.5
-io.circe:circe-numbers_2.13:0.14.5
-io.circe:circe-parser_2.13:0.14.5
-io.joern:c2cpg_2.13:1.1.1731
-io.joern:dataflowengineoss_2.13:1.1.1731
-io.joern:javaparser-core:3.24.3-SL3
-io.joern:javaparser-symbol-solver-core:3.24.3-SL3
-io.joern:javasrc2cpg_2.13:1.1.1731
-io.joern:jimple2cpg_2.13:1.1.1731
-io.joern:jssrc2cpg_2.13:1.1.1731
-io.joern:pysrc2cpg_2.13:1.1.1731
-io.joern:semanticcpg_2.13:1.1.1731
-io.joern:x2cpg_2.13:1.1.1731
-io.shiftleft:codepropertygraph-domain-classes_2.13:1.3.600
-io.shiftleft:codepropertygraph-protos_2.13:1.3.600
-io.shiftleft:codepropertygraph_2.13:1.3.600
-io.shiftleft:overflowdb-core:1.171
-io.shiftleft:overflowdb-formats_2.13:1.171
-io.shiftleft:overflowdb-traversal_2.13:1.171
-io.spray:spray-json_2.13:1.3.6
+io.appthreat:atom_3:1.0.0
+io.circe:circe-core_3:0.14.5
+io.circe:circe-generic_3:0.14.5
+io.circe:circe-jawn_3:0.14.5
+io.circe:circe-numbers_3:0.14.5
+io.circe:circe-parser_3:0.14.5
+io.get-coursier:coursier-cache_2.13:2.1.2
+io.get-coursier:coursier-core_2.13:2.1.2
+io.get-coursier:coursier-proxy-setup:2.1.2
+io.get-coursier:coursier-util_2.13:2.1.2
+io.get-coursier:coursier_2.13:2.1.2
+io.get-coursier.jniutils:windows-jni-utils:0.3.3
+io.github.alexarchambault:concurrent-reference-hash-map:1.1.0
+io.github.alexarchambault.windows-ansi:windows-ansi:0.0.4
+io.joern:c2cpg_3:2.0.56
+io.joern:dataflowengineoss_3:2.0.56
+io.joern:javasrc2cpg_3:2.0.56
+io.joern:jimple2cpg_3:2.0.56
+io.joern:jssrc2cpg_3:2.0.56
+io.joern:pysrc2cpg_3:2.0.56
+io.joern:semanticcpg_3:2.0.56
+io.joern:x2cpg_3:2.0.56
+io.shiftleft:codepropertygraph-domain-classes_3:1.4.20
+io.shiftleft:codepropertygraph-protos_3:1.4.20
+io.shiftleft:codepropertygraph_3:1.4.20
+io.shiftleft:overflowdb-core_3:1.180
+io.shiftleft:overflowdb-formats_3:1.180
+io.shiftleft:overflowdb-traversal_3:1.180
+io.spray:spray-json_3:1.3.6
 javax.activation:javax.activation-api:1.2.0
 javax.annotation:javax.annotation-api:1.3.2
+javax.inject:javax.inject:1
 javax.xml.bind:jaxb-api:2.4.0-b180830.0359
+net.java.dev.jna:jna:5.3.1
 net.lingala.zip4j:zip4j:2.11.5
 net.oneandone.reflections8:reflections8:0.11.7
 net.sf.trove4j:core:3.1.0
 org.antlr:antlr4-runtime:4.7
-org.checkerframework:checker-qual:3.12.0
-org.eclipse.platform:org.eclipse.core.commands:3.10.400
-org.eclipse.platform:org.eclipse.core.contenttype:3.8.200
-org.eclipse.platform:org.eclipse.core.filebuffers:3.7.200
-org.eclipse.platform:org.eclipse.core.filesystem:1.9.500
-org.eclipse.platform:org.eclipse.core.jobs:3.13.200
-org.eclipse.platform:org.eclipse.core.resources:3.18.200
-org.eclipse.platform:org.eclipse.core.runtime:3.26.100
+org.apache.commons:commons-compress:1.22
+org.apache.xbean:xbean-reflect:3.7
+org.checkerframework:checker-qual:3.33.0
+org.codehaus.plexus:plexus-archiver:4.6.3
+org.codehaus.plexus:plexus-classworlds:2.6.0
+org.codehaus.plexus:plexus-container-default:2.1.1
+org.codehaus.plexus:plexus-io:3.4.1
+org.codehaus.plexus:plexus-utils:3.5.1
+org.eclipse.platform:org.eclipse.core.commands:3.11.0
+org.eclipse.platform:org.eclipse.core.contenttype:3.9.0
+org.eclipse.platform:org.eclipse.core.filebuffers:3.8.0
+org.eclipse.platform:org.eclipse.core.filesystem:1.10.0
+org.eclipse.platform:org.eclipse.core.jobs:3.14.0
+org.eclipse.platform:org.eclipse.core.resources:3.19.0
+org.eclipse.platform:org.eclipse.core.runtime:3.27.0
 org.eclipse.platform:org.eclipse.equinox.app:1.6.200
-org.eclipse.platform:org.eclipse.equinox.common:3.17.100
-org.eclipse.platform:org.eclipse.equinox.preferences:3.10.100
+org.eclipse.platform:org.eclipse.equinox.common:3.18.0
+org.eclipse.platform:org.eclipse.equinox.preferences:3.10.200
 org.eclipse.platform:org.eclipse.equinox.registry:3.11.200
-org.eclipse.platform:org.eclipse.jface:3.29.0
-org.eclipse.platform:org.eclipse.jface.text:3.23.0
-org.eclipse.platform:org.eclipse.osgi:3.18.300
-org.eclipse.platform:org.eclipse.text:3.12.300
+org.eclipse.platform:org.eclipse.osgi:3.18.400
+org.eclipse.platform:org.eclipse.text:3.13.0
 org.functionaljava:functionaljava:4.2
+org.fusesource.jansi:jansi:1.18
 org.glassfish.jaxb:jaxb-runtime:2.4.0-b180830.0438
 org.glassfish.jaxb:txw2:2.4.0-b180830.0438
-org.gradle:gradle-tooling-api:7.6.1
-org.javassist:javassist:3.29.0-GA
+org.gradle:gradle-tooling-api:8.2.1
+org.iq80.snappy:snappy:0.4
+org.javassist:javassist:3.29.2-GA
 org.jline:jline:3.23.0
-org.json4s:json4s-ast_2.13:4.0.6
-org.json4s:json4s-core_2.13:4.0.6
-org.json4s:json4s-native-core_2.13:4.0.6
-org.json4s:json4s-native_2.13:4.0.6
-org.json4s:json4s-scalap_2.13:4.0.6
+org.jline:jline-reader:3.19.0
+org.jline:jline-terminal:3.19.0
+org.jline:jline-terminal-jna:3.19.0
+org.json4s:json4s-ast_3:4.0.6
+org.json4s:json4s-core_3:4.0.6
+org.json4s:json4s-native-core_3:4.0.6
+org.json4s:json4s-native_3:4.0.6
+org.json4s:json4s-scalap_3:4.0.6
 org.jvnet.staxex:stax-ex:1.8
 org.msgpack:msgpack-core:0.9.1
 org.osgi:org.osgi.service.prefs:1.1.2
@@ -104,14 +130,24 @@ org.ow2.asm:asm-analysis:9.4
 org.ow2.asm:asm-commons:9.4
 org.ow2.asm:asm-tree:9.4
 org.ow2.asm:asm-util:9.4
-org.projectlombok:lombok:1.18.26
-org.scala-lang.modules:scala-parallel-collections_2.13:1.0.4
-org.scala-lang.modules:scala-parser-combinators_2.13:2.2.0
-org.scala-lang.modules:scala-xml_2.13:2.1.0
+org.projectlombok:lombok:1.18.28
+org.scala-lang:scala3-compiler_3:3.3.0
+org.scala-lang:scala3-interfaces:3.3.0
+org.scala-lang:scala3-library_3:3.3.0
+org.scala-lang:tasty-core_3:3.3.0
+org.scala-lang.modules:scala-asm:9.4.0-scala-1
+org.scala-lang.modules:scala-collection-compat_3:2.8.1
+org.scala-lang.modules:scala-parallel-collections_3:1.0.4
+org.scala-lang.modules:scala-parser-combinators_3:2.2.0
+org.scala-lang.modules:scala-xml_3:2.1.0
+org.scala-sbt:compiler-interface:1.3.5
+org.scala-sbt:util-interface:1.3.0
 org.slf4j:slf4j-api:2.0.7
 org.smali:dexlib2:2.5.2
 org.soot-oss:soot:4.4.1
-org.typelevel:cats-core_2.13:2.9.0
-org.typelevel:cats-kernel_2.13:2.9.0
-org.typelevel:jawn-parser_2.13:1.4.0
+org.tukaani:xz:1.9
+org.typelevel:cats-core_3:2.9.0
+org.typelevel:cats-kernel_3:2.9.0
+org.typelevel:jawn-parser_3:1.4.0
+org.virtuslab.scala-cli:config_2.13:0.2.0
 xmlpull:xmlpull:1.1.3.4d_b4_min
\ No newline at end of file
diff --git a/test/data/atom-sbt-tree.txt b/test/data/atom-sbt-tree.txt
index a1721099c..22adae7d7 100644
--- a/test/data/atom-sbt-tree.txt
+++ b/test/data/atom-sbt-tree.txt
@@ -1,2572 +1,5371 @@
-io.appthreat:atom_2.13:1.0.0 [S]
-  +-com.github.pathikrit:better-files_2.13:3.9.2 [S]
-  +-com.github.scopt:scopt_2.13:4.1.0 [S]
-  +-io.joern:c2cpg_2.13:1.1.1731 [S]
+io.appthreat:atom_3:1.0.0
+  +-com.github.pathikrit:better-files_3:3.9.2
+  | +-org.scala-lang:scala3-library_3:3.2.2 (evicted by: 3.3.0)
+  | +-org.scala-lang:scala3-library_3:3.3.0 [S]
+  | 
+  +-com.github.scopt:scopt_3:4.1.0
+  | +-org.scala-lang:scala3-library_3:3.1.3 (evicted by: 3.3.0)
+  | +-org.scala-lang:scala3-library_3:3.3.0 [S]
+  | 
+  +-io.joern:c2cpg_3:2.0.56
   | +-com.diffplug.spotless:spotless-eclipse-cdt:10.5.0
   | | +-com.diffplug.spotless:spotless-eclipse-base:3.5.2
-  | | | +-org.eclipse.platform:org.eclipse.core.resources:3.18.200
-  | | | | +-org.eclipse.platform:org.eclipse.core.filesystem:1.9.500
-  | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:3.17.100
-  | | | | | | +-org.eclipse.platform:org.eclipse.osgi:3.18.300
+  | | | +-org.eclipse.platform:org.eclipse.core.resources:3.19.0
+  | | | | +-org.eclipse.platform:org.eclipse.core.filesystem:1.10.0
+  | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:3.18.0
+  | | | | | | +-org.eclipse.platform:org.eclipse.osgi:3.18.400
   | | | | | | 
-  | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:[3.2.0,4.0.0) (e..
   | | | | | +-org.eclipse.platform:org.eclipse.equinox.registry:3.11.200
-  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:3.17.100
-  | | | | | | | +-org.eclipse.platform:org.eclipse.osgi:3.18.300
+  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:3.18.0
+  | | | | | | | +-org.eclipse.platform:org.eclipse.osgi:3.18.400
   | | | | | | | 
-  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:[3.15.100,4.0...
+  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:[3.15.100,4.0.0) (evicted by: 3.18.0)
   | | | | | | 
-  | | | | | +-org.eclipse.platform:org.eclipse.equinox.registry:[3.2.0,4.0.0) ..
-  | | | | | +-org.eclipse.platform:org.eclipse.osgi:3.18.300
-  | | | | | +-org.eclipse.platform:org.eclipse.osgi:[3.2.0,4.0.0) (evicted by:..
+  | | | | | +-org.eclipse.platform:org.eclipse.osgi:3.18.400
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+  | | | | +-org.eclipse.platform:org.eclipse.core.runtime:3.27.0
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   | | | | | | | 
-  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:[3.13.0,4.0.0)..
-  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.preferences:3.10.100
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   | | | | | | | | 
-  | | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:[3.2.0,4.0.0..
-  | | | | | | | +-org.eclipse.platform:org.eclipse.osgi:3.18.300
-  | | | | | | | +-org.eclipse.platform:org.eclipse.osgi:[0.0,) (evicted by: 3...
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   | | | | | | | +-org.osgi:org.osgi.service.prefs:1.1.2
-  | | | | | | | | +-org.osgi:osgi.annotation:8.0.1
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-  | | | | | | | +-org.osgi:org.osgi.service.prefs:[1.1.0,1.2.0) (evicted by: 1..
-  | | | | | | | 
-  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.preferences:[3.2.0,4...
+  | | | | | | |   +-org.osgi:osgi.annotation:8.0.1
+  | | | | | | |   
   | | | | | | +-org.eclipse.platform:org.eclipse.equinox.registry:3.11.200
-  | | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:3.17.100
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   | | | | | | 
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-  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:3.17.0 (evicte..
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-  | | | | | | | +-org.eclipse.platform:org.eclipse.osgi:3.18.300
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   | | | | | | 
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-  | | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:[3.15.100,4...
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-  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.registry:[3.4.0,4.0.0..
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   | | | | | | | 
-  | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:[3.2.0,4.0.0) ..
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-  | | | | | | +-org.eclipse.platform:org.eclipse.osgi:[0.0,) (evicted by: 3.18..
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-  | | | | | | | +-org.osgi:osgi.annotation:8.0.1
-  | | | | | | | 
-  | | | | | | +-org.osgi:org.osgi.service.prefs:[1.1.0,1.2.0) (evicted by: 1.1..
-  | | | | | | 
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   | | | | | | 
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   | | | +-org.slf4j:slf4j-api:2.0.7
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   | | | 
-  | | +-com.diffplug.spotless:spotless-eclipse-base:[3.5.0,4.0.0) (evicted by:..
-  | | +-com.ibm.icu:icu4j:72.1
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-    | | | +-org.json4s:json4s-native-core_2.13:4.0.6 [S]
-    | | |   +-org.json4s:json4s-ast_2.13:4.0.6 [S]
-    | | |   
-    | | +-org.slf4j:slf4j-api:2.0.7
-    | | 
-    | +-org.slf4j:slf4j-api:2.0.7
-    | 
-    +-io.shiftleft:codepropertygraph_2.13:1.3.600 [S]
-    | +-com.github.pathikrit:better-files_2.13:3.9.2 [S]
-    | +-com.github.scopt:scopt_2.13:4.0.1 (evicted by: 4.1.0)
-    | +-com.github.scopt:scopt_2.13:4.1.0 [S]
-    | +-io.shiftleft:codepropertygraph-domain-classes_2.13:1.3.600 [S]
-    | | +-io.shiftleft:overflowdb-traversal_2.13:1.171 [S]
-    | |   +-com.massisframework:j-text-utils:0.3.4
-    | |   | +-au.com.bytecode:opencsv:2.4
-    | |   | +-com.google.guava:guava:21.0 (evicted by: 31.1-jre)
-    | |   | +-com.google.guava:guava:31.1-jre
-    | |   | | +-com.google.code.findbugs:jsr305:3.0.2
-    | |   | | +-com.google.errorprone:error_prone_annotations:2.11.0
-    | |   | | +-com.google.guava:failureaccess:1.0.1
-    | |   | | +-com.google.guava:listenablefuture:9999.0-empty-to-avoid-confli..
-    | |   | | +-com.google.j2objc:j2objc-annotations:1.3
-    | |   | | +-org.checkerframework:checker-qual:3.12.0
-    | |   | | 
-    | |   | +-commons-lang:commons-lang:2.6
-    | |   | 
-    | |   +-io.shiftleft:overflowdb-core:1.171
-    | |   | +-com.h2database:h2-mvstore:1.4.200
-    | |   | +-net.sf.trove4j:core:3.1.0
-    | |   | +-org.msgpack:msgpack-core:0.9.1
-    | |   | +-org.slf4j:slf4j-api:2.0.7
-    | |   | 
-    | |   +-net.oneandone.reflections8:reflections8:0.11.7
-    | |     +-org.javassist:javassist:3.22.0-GA (evicted by: 3.29.0-GA)
-    | |     +-org.javassist:javassist:3.29.0-GA
-    | |     
-    | +-io.shiftleft:codepropertygraph-protos_2.13:1.3.600 [S]
-    | | +-com.google.protobuf:protobuf-java:3.10.0 (evicted by: 3.21.7)
-    | | +-com.google.protobuf:protobuf-java:3.21.7
-    | | 
-    | +-io.shiftleft:overflowdb-formats_2.13:1.171 [S]
-    | | +-com.github.scopt:scopt_2.13:4.1.0 [S]
-    | | +-com.github.tototoshi:scala-csv_2.13:1.3.10 [S]
-    | | +-io.shiftleft:overflowdb-traversal_2.13:1.171 [S]
-    | | | +-com.massisframework:j-text-utils:0.3.4
-    | | | | +-au.com.bytecode:opencsv:2.4
-    | | | | +-com.google.guava:guava:21.0 (evicted by: 31.1-jre)
-    | | | | +-com.google.guava:guava:31.1-jre
-    | | | | | +-com.google.code.findbugs:jsr305:3.0.2
-    | | | | | +-com.google.errorprone:error_prone_annotations:2.11.0
-    | | | | | +-com.google.guava:failureaccess:1.0.1
-    | | | | | +-com.google.guava:listenablefuture:9999.0-empty-to-avoid-confli..
-    | | | | | +-com.google.j2objc:j2objc-annotations:1.3
-    | | | | | +-org.checkerframework:checker-qual:3.12.0
-    | | | | | 
-    | | | | +-commons-lang:commons-lang:2.6
-    | | | | 
-    | | | +-io.shiftleft:overflowdb-core:1.171
-    | | | | +-com.h2database:h2-mvstore:1.4.200
-    | | | | +-net.sf.trove4j:core:3.1.0
-    | | | | +-org.msgpack:msgpack-core:0.9.1
-    | | | | +-org.slf4j:slf4j-api:2.0.7
-    | | | | 
-    | | | +-net.oneandone.reflections8:reflections8:0.11.7
-    | | |   +-org.javassist:javassist:3.22.0-GA (evicted by: 3.29.0-GA)
-    | | |   +-org.javassist:javassist:3.29.0-GA
-    | | |   
-    | | +-io.spray:spray-json_2.13:1.3.6 [S]
-    | | +-org.scala-lang.modules:scala-xml_2.13:2.1.0 [S]
-    | | 
-    | +-io.shiftleft:overflowdb-traversal_2.13:1.171 [S]
-    | | +-com.massisframework:j-text-utils:0.3.4
-    | | | +-au.com.bytecode:opencsv:2.4
-    | | | +-com.google.guava:guava:21.0 (evicted by: 31.1-jre)
-    | | | +-com.google.guava:guava:31.1-jre
-    | | | | +-com.google.code.findbugs:jsr305:3.0.2
-    | | | | +-com.google.errorprone:error_prone_annotations:2.11.0
-    | | | | +-com.google.guava:failureaccess:1.0.1
-    | | | | +-com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict..
-    | | | | +-com.google.j2objc:j2objc-annotations:1.3
-    | | | | +-org.checkerframework:checker-qual:3.12.0
-    | | | | 
-    | | | +-commons-lang:commons-lang:2.6
-    | | | 
-    | | +-io.shiftleft:overflowdb-core:1.171
-    | | | +-com.h2database:h2-mvstore:1.4.200
-    | | | +-net.sf.trove4j:core:3.1.0
-    | | | +-org.msgpack:msgpack-core:0.9.1
-    | | | +-org.slf4j:slf4j-api:2.0.7
-    | | | 
-    | | +-net.oneandone.reflections8:reflections8:0.11.7
-    | |   +-org.javassist:javassist:3.22.0-GA (evicted by: 3.29.0-GA)
-    | |   +-org.javassist:javassist:3.29.0-GA
-    | |   
-    | +-org.slf4j:slf4j-api:2.0.6 (evicted by: 2.0.7)
-    | +-org.slf4j:slf4j-api:2.0.7
-    | 
-    +-org.scala-lang.modules:scala-parallel-collections_2.13:1.0.4 [S]
-    +-org.slf4j:slf4j-api:2.0.7
-    
\ No newline at end of file
+  +-org.scala-lang:scala3-library_3:3.3.0 [S]
+  
\ No newline at end of file
diff --git a/utils.js b/utils.js
index 16bb8707d..5b49b40a3 100644
--- a/utils.js
+++ b/utils.js
@@ -1835,7 +1835,9 @@ export const executeGradleProperties = function (dir, rootPath, subProject) {
         );
       }
       if (result.stderr.includes("not get unknown property")) {
-        console.log("2. Check if the SBoM is generated for the correct root project for your application.");
+        console.log(
+          "2. Check if the SBoM is generated for the correct root project for your application."
+        );
       }
     }
   }
@@ -1934,21 +1936,32 @@ export const parseKVDep = function (rawOutput) {
     rawOutput.split("\n").forEach((l) => {
       l = l.replace("\r", "");
       const tmpA = l.split(":");
+      let group = "";
+      let name = "";
+      let version = "";
       if (tmpA.length === 3) {
-        deps.push({
-          group: tmpA[0],
-          name: tmpA[1],
-          version: tmpA[2],
-          qualifiers: { type: "jar" }
-        });
+        group = tmpA[0];
+        name = tmpA[1];
+        version = tmpA[2];
       } else if (tmpA.length === 2) {
-        deps.push({
-          group: "",
-          name: tmpA[0],
-          version: tmpA[1],
-          qualifiers: { type: "jar" }
-        });
+        name = tmpA[0];
+        version = tmpA[1];
       }
+      const purlString = new PackageURL(
+        "maven",
+        group,
+        name,
+        version,
+        { type: "jar" },
+        null
+      ).toString();
+      deps.push({
+        group,
+        name,
+        version,
+        purl: decodeURIComponent(purlString),
+        "bom-ref": purlString
+      });
     });
     return deps;
   }
@@ -4552,6 +4565,135 @@ export const parseComposerLock = function (pkgLockFile) {
   return pkgList;
 };
 
+export const parseSbtTree = (sbtTreeFile) => {
+  const pkgList = [];
+  const dependenciesList = [];
+  const keys_cache = {};
+  const level_trees = {};
+  const tmpA = readFileSync(sbtTreeFile, "utf-8").split("\n");
+  let last_level = 0;
+  let last_purl = "";
+  let stack = [];
+  let first_purl = "";
+  tmpA.forEach((l) => {
+    l = l.replace("\r", "");
+    // Ignore evicted packages and packages with multiple version matches indicated with a comma
+    // | +-org.scala-lang:scala3-library_3:3.1.3 (evicted by: 3.3.0)
+    // | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:[3.15.100,4.0...
+    // | | | | | | | +-org.eclipse.platform:org.eclipse.equinox.common:3.17.100 (ev..
+    if (l.includes("(evicted") || l.includes(",")) {
+      return;
+    }
+    let level = 0;
+    let isLibrary = false;
+    if (l.startsWith("  ")) {
+      level = l.split("|").length;
+    }
+    // This will skip blank lines such as "| | | | | | | "
+    if (level > 0 && !l.includes("+-")) {
+      return;
+    }
+    if (l.endsWith("[S]")) {
+      isLibrary = true;
+    }
+    const tmpB = l.split("+-");
+    const pkgLine = tmpB[tmpB.length - 1].split(" ")[0];
+    if (!pkgLine.includes(":")) {
+      return;
+    }
+    const pkgParts = pkgLine.split(":");
+    let group = "";
+    let name = "";
+    let version = "";
+    if (pkgParts.length === 3) {
+      group = pkgParts[0];
+      name = pkgParts[1];
+      version = pkgParts[2];
+    } else if (pkgParts.length === 2) {
+      // unlikely for scala
+      name = pkgParts[0];
+      version = pkgParts[1];
+    }
+    const purlString = new PackageURL(
+      "maven",
+      group,
+      name,
+      version,
+      { type: "jar" },
+      null
+    ).toString();
+    // Filter duplicates
+    if (!keys_cache[purlString]) {
+      const adep = {
+        group,
+        name,
+        version,
+        purl: decodeURIComponent(purlString),
+        "bom-ref": purlString,
+        evidence: {
+          identity: {
+            field: "purl",
+            confidence: 1,
+            methods: [
+              {
+                technique: "manifest-analysis",
+                confidence: 1,
+                value: sbtTreeFile
+              }
+            ]
+          }
+        }
+      };
+      if (isLibrary) {
+        adep["type"] = "library";
+      }
+      pkgList.push(adep);
+      keys_cache[purlString] = true;
+    }
+    // From here the logic is similar to parsing gradle tree
+    if (!level_trees[purlString]) {
+      level_trees[purlString] = [];
+    }
+    if (level == 0) {
+      first_purl = purlString;
+      stack = [first_purl];
+      stack.push(purlString);
+    } else if (last_purl === "") {
+      stack.push(purlString);
+    } else if (level > last_level) {
+      const cnodes = level_trees[last_purl] || [];
+      if (!cnodes.includes(purlString)) {
+        cnodes.push(purlString);
+      }
+      level_trees[last_purl] = cnodes;
+      if (stack[stack.length - 1] !== purlString) {
+        stack.push(purlString);
+      }
+    } else {
+      for (let i = level; i <= last_level; i++) {
+        stack.pop();
+      }
+      const last_stack =
+        stack.length > 0 ? stack[stack.length - 1] : first_purl;
+      const cnodes = level_trees[last_stack] || [];
+      if (!cnodes.includes(purlString)) {
+        cnodes.push(purlString);
+      }
+      level_trees[last_stack] = cnodes;
+      stack.push(purlString);
+    }
+    last_level = level;
+    last_purl = purlString;
+  });
+  for (const lk of Object.keys(level_trees)) {
+    dependenciesList.push({
+      ref: lk,
+      dependsOn: level_trees[lk]
+    });
+  }
+  return { pkgList, dependenciesList };
+};
+
 /**
  * Parse sbt lock file
  *
diff --git a/utils.test.js b/utils.test.js
index 1c0b5107c..4f271c711 100644
--- a/utils.test.js
+++ b/utils.test.js
@@ -67,7 +67,8 @@ import {
   guessPypiMatchingVersion,
   encodeForPurl,
   parsePackageJsonName,
-  parsePyProjectToml
+  parsePyProjectToml,
+  parseSbtTree
 } from "./utils.js";
 import { readFileSync } from "node:fs";
 import { parse } from "ssri";
@@ -2130,7 +2131,13 @@ test("parse scala sbt list", () => {
   deps = parseKVDep(
     readFileSync("./test/data/atom-sbt-list.txt", { encoding: "utf-8" })
   );
-  expect(deps.length).toEqual(117);
+  expect(deps.length).toEqual(153);
+});
+
+test("parse scala sbt tree", () => {
+  let retMap = parseSbtTree("./test/data/atom-sbt-tree.txt");
+  expect(retMap.pkgList.length).toEqual(153);
+  expect(retMap.dependenciesList.length).toEqual(153);
 });
 
 test("parse scala sbt lock", () => {