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Gill-Chiel-eNeuro-2020-metadata.yml
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Gill-Chiel-eNeuro-2020-metadata.yml
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# === GLOBAL PARAMETERS ======================================================
neurotic_config:
# prepended to remote_data_dir unless remote_data_dir is already a full URL
remote_data_root: https://gin.g-node.org/jpgill86/Gill-Chiel-eNeuro-2020-data/raw/master
# these aliases are not officially part of the neurotic spec, but are
# instead a feature of the YAML language, and nesting them under
# neurotic_config ensures neurotic will not mistake them for a dataset
aliases:
colors:
- &color-B38 'EFBF46' # yellow
- &color-I2 'DC5151' # red
- &color-B8 'DA8BC3' # pink
- &color-B6B9 '64B5CD' # light blue
- &color-B3B6B9 '5A9BC5' # medium blue
- &color-B3 '4F80BD' # dark blue
- &color-B4B5 '00A86B' # jade green
- &color-traces '666666' # dark gray
epoch_encoder_possible_labels: &epoch_encoder_possible_labels
- B38 activity
- I2 protraction activity
- B8 activity
- B3/6/9/10 activity
- B4/B5 activity
- Inward movement
- Force shoulder end
- Force rise start
- Force plateau start
- Force plateau end
- Force drop end
filters: &filters
- channel: I2
lowpass: 100 # Hz
filters-JG07: &filters-JG07 # I2 channel was named differently for JG07
- channel: I2-L
lowpass: 100 # Hz
burst_detectors: &burst_detectors # used only if fast loading is off (lazy=False)
- &burst_detectors-B38
spiketrain: B38
thresholds: [8, 5] # Hz, based on McManus et al. 2014
- &burst_detectors-I2
spiketrain: I2
thresholds: [10, 5] # Hz, same as Cullins et al. 2015a (based on Hurwitz et al. 1996)
- &burst_detectors-B8
spiketrain: B8a/b
thresholds: [3, 3] # Hz, same as Cullins et al. 2015a (based on Morton and Chiel 1993a)
- &burst_detectors-B6B9
spiketrain: B6/B9
thresholds: [10, 5] # Hz, based on Lu et al. 2015
- &burst_detectors-B3
spiketrain: B3
thresholds: [8, 2] # Hz, based on Lu et al. 2015
- &burst_detectors-B4B5
spiketrain: B4/B5
thresholds: [3, 3] # Hz, same as Cullins et al. 2015a ? (Table 1 says 3 Hz, text says first/last spike; based on Warman and Chiel 1995 ?)
# === DATA SETS ==============================================================
# --- ANIMAL 1 ---------------------------------------------------------------
Animal 1 Unloaded 1:
description: 'JG07 2018-05-20 002 [1169, 1191]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 1
data_file: Animal 1 Unloaded 1.axgx
video_file: Animal 1 Unloaded 1.mp4
annotations_file: Animal 1 Unloaded 1 Annotations.csv
epoch_encoder_file: Animal 1 Unloaded 1 Epoch Encoder.csv
video_offset: 1169 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: &plots-JG07
- channel: I2-L
ylim: [-30, 30] # uV
color: *color-traces
- channel: RN-L
ylim: [-60, 60] # uV
color: *color-traces
- channel: BN2-L
ylim: [-100, 100] # uV
color: *color-traces
- channel: BN3-L
ylim: [-80, 80] # uV
color: *color-traces
- channel: Force
ylim: [-10, 300] # mN
color: *color-traces
filters: *filters-JG07 # used only if fast loading is off (lazy=False)
amplitude_discriminators: &litude_discriminators-JG07 # used only if fast loading is off (lazy=False)
- name: B38
channel: BN2-L
units: uV
amplitude: [15, 30]
epoch: B38 activity
color: *color-B38
- name: I2
channel: I2-L
units: uV
amplitude: [2, 30]
epoch: I2 protraction activity
color: *color-I2
- name: B8a/b
channel: RN-L
units: uV
amplitude: [-40, -10]
epoch: B8 activity
color: *color-B8
- name: B6/B9
channel: BN2-L
units: uV
amplitude: [-40, -12]
epoch: B3/6/9/10 activity
color: *color-B6B9
- name: B3
channel: BN2-L
units: uV
amplitude: [40, 100]
epoch: B3/6/9/10 activity
color: *color-B3
- name: B4/B5
channel: BN3-L
units: uV
amplitude: [50, 120]
epoch: B4/B5 activity
color: *color-B4B5
burst_detectors: &burst_detectors-JG07 # used only if fast loading is off (lazy=False)
- *burst_detectors-B38
- *burst_detectors-I2
- spiketrain: B8a/b
thresholds: [2, 2] # Hz, both thresholds reduced for this animal because B8a/b signal was weak with few spikes
- *burst_detectors-B6B9
- *burst_detectors-B3
- *burst_detectors-B4B5
Animal 1 Unloaded 2:
description: 'JG07 2018-05-20 002 [1495, 1518]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 2
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 2
data_file: Animal 1 Unloaded 2.axgx
video_file: Animal 1 Unloaded 2.mp4
annotations_file: Animal 1 Unloaded 2 Annotations.csv
epoch_encoder_file: Animal 1 Unloaded 2 Epoch Encoder.csv
video_offset: 1495 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG07
filters: *filters-JG07 # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG07 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG07 # used only if fast loading is off (lazy=False)
Animal 1 Unloaded 3:
description: 'JG07 2018-05-20 002 [1581, 1615]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 3
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 3
data_file: Animal 1 Unloaded 3.axgx
video_file: Animal 1 Unloaded 3.mp4
annotations_file: Animal 1 Unloaded 3 Annotations.csv
epoch_encoder_file: Animal 1 Unloaded 3 Epoch Encoder.csv
video_offset: 1581 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG07
filters: *filters-JG07 # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG07 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG07 # used only if fast loading is off (lazy=False)
Animal 1 Loaded 1:
description: 'JG07 2018-05-20 002 [2716, 2755]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Loaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Loaded 1
data_file: Animal 1 Loaded 1.axgx
video_file: Animal 1 Loaded 1.mp4
annotations_file: Animal 1 Loaded 1 Annotations.csv
epoch_encoder_file: Animal 1 Loaded 1 Epoch Encoder.csv
video_offset: 2716 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG07
filters: *filters-JG07 # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG07 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG07 # used only if fast loading is off (lazy=False)
# --- ANIMAL 2 ---------------------------------------------------------------
Animal 2 Unloaded 1:
description: 'JG08 2018-06-21 002 [ 256, 287]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 1
data_file: Animal 2 Unloaded 1.axgx
video_file: Animal 2 Unloaded 1.mp4
annotations_file: Animal 2 Unloaded 1 Annotations.csv
epoch_encoder_file: Animal 2 Unloaded 1 Epoch Encoder.csv
video_offset: 256 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: &plots-JG08
- channel: I2
ylim: [-30, 30] # uV
color: *color-traces
- channel: RN
ylim: [-100, 100] # uV
color: *color-traces
- channel: BN2
ylim: [-150, 150] # uV
color: *color-traces
- channel: BN3
ylim: [-150, 150] # uV
color: *color-traces
- channel: Force
ylim: [-10, 300] # mN
color: *color-traces
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: &litude_discriminators-JG08 # used only if fast loading is off (lazy=False)
- name: B38
channel: BN2
units: uV
amplitude: [17, 26]
epoch: B38 activity
color: *color-B38
- name: I2
channel: I2
units: uV
amplitude: [2, 75]
epoch: I2 protraction activity
color: *color-I2
- name: B8a/b
channel: RN
units: uV
amplitude: [-50, -12]
epoch: B8 activity
color: *color-B8
- name: B6/B9
channel: BN2
units: uV
amplitude: [-50, -30]
epoch: B3/6/9/10 activity
color: *color-B6B9
- name: B3
channel: BN2
units: uV
amplitude: [50, 150]
epoch: B3/6/9/10 activity
color: *color-B3
- name: B4/B5
channel: BN3
units: uV
amplitude: [50, 200]
epoch: B4/B5 activity
color: *color-B4B5
burst_detectors: &burst_detectors-JG08 # used only if fast loading is off (lazy=False)
- *burst_detectors-B38
- *burst_detectors-I2
- *burst_detectors-B8
- spiketrain: B6/B9
thresholds: [10, 3] # Hz, end threshold reduced for this animal
- *burst_detectors-B3
- *burst_detectors-B4B5
Animal 2 Unloaded 2:
description: 'JG08 2018-06-21 002 [ 454, 481]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 2
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 2
data_file: Animal 2 Unloaded 2.axgx
video_file: Animal 2 Unloaded 2.mp4
annotations_file: Animal 2 Unloaded 2 Annotations.csv
epoch_encoder_file: Animal 2 Unloaded 2 Epoch Encoder.csv
video_offset: 454 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG08
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False)
Animal 2 Loaded 1:
description: 'JG08 2018-06-21 002 [ 141, 210]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 1
data_file: Animal 2 Loaded 1.axgx
video_file: Animal 2 Loaded 1.mp4
annotations_file: Animal 2 Loaded 1 Annotations.csv
epoch_encoder_file: Animal 2 Loaded 1 Epoch Encoder.csv
video_offset: 141 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG08
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False)
Animal 2 Loaded 2:
description: 'JG08 2018-06-21 002 [ 660, 701]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 2
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 2
data_file: Animal 2 Loaded 2.axgx
video_file: Animal 2 Loaded 2.mp4
annotations_file: Animal 2 Loaded 2 Annotations.csv
epoch_encoder_file: Animal 2 Loaded 2 Epoch Encoder.csv
video_offset: 660 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG08
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False)
Animal 2 Loaded 3:
description: 'JG08 2018-06-21 002 [1448, 1477]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 3
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 3
data_file: Animal 2 Loaded 3.axgx
video_file: Animal 2 Loaded 3.mp4
annotations_file: Animal 2 Loaded 3 Annotations.csv
epoch_encoder_file: Animal 2 Loaded 3 Epoch Encoder.csv
video_offset: 1448 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG08
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False)
# --- ANIMAL 3 ---------------------------------------------------------------
Animal 3 Unloaded 1:
description: 'JG11 2019-04-03 001 [1791, 1819]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 1
data_file: Animal 3 Unloaded 1.axgx
video_file: Animal 3 Unloaded 1.mp4
annotations_file: Animal 3 Unloaded 1 Annotations.csv
epoch_encoder_file: Animal 3 Unloaded 1 Epoch Encoder.csv
video_offset: 1791 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: &plots-JG11
- channel: I2
ylim: [-30, 30] # uV
color: *color-traces
- channel: RN
ylim: [-30, 30] # uV
color: *color-traces
- channel: BN2
ylim: [-100, 100] # uV
color: *color-traces
- channel: BN3-PROX
ylim: [-100, 100] # uV
color: *color-traces
- channel: Force
ylim: [-10, 500] # mN
color: *color-traces
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: &litude_discriminators-JG11 # used only if fast loading is off (lazy=False)
- name: B38
channel: BN2
units: uV
amplitude: [20, 50]
epoch: B38 activity
color: *color-B38
- name: I2
channel: I2
units: uV
amplitude: [2, 20]
epoch: I2 protraction activity
color: *color-I2
- name: B8a/b
channel: RN
units: uV
amplitude: [-30, -8]
epoch: B8 activity
color: *color-B8
- name: B6/B9
channel: BN2
units: uV
amplitude: [-60, -15]
epoch: B3/6/9/10 activity
color: *color-B6B9
- name: B3
channel: BN2
units: uV
amplitude: [-120, -60]
epoch: B3/6/9/10 activity
color: *color-B3
- name: B4/B5
channel: BN3-PROX
units: uV
amplitude: [70, 150]
epoch: B4/B5 activity
color: *color-B4B5
burst_detectors: &burst_detectors-JG11 # used only if fast loading is off (lazy=False)
- *burst_detectors-B38
- *burst_detectors-I2
- *burst_detectors-B8
- *burst_detectors-B6B9
- *burst_detectors-B3
- spiketrain: B4/B5
thresholds: [1.5, 1.5] # Hz, both thresholds reduced for this animal because only one neuron appeared to project
Animal 3 Unloaded 2:
description: 'JG11 2019-04-03 004 [ 551, 568]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 2
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 2
data_file: Animal 3 Unloaded 2.axgx
video_file: Animal 3 Unloaded 2.mp4
annotations_file: Animal 3 Unloaded 2 Annotations.csv
epoch_encoder_file: Animal 3 Unloaded 2 Epoch Encoder.csv
video_offset: 551 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG11
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG11 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG11 # used only if fast loading is off (lazy=False)
Animal 3 Loaded 1:
description: 'JG11 2019-04-03 004 [1226, 1280]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Loaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Loaded 1
data_file: Animal 3 Loaded 1.axgx
video_file: Animal 3 Loaded 1.mp4
annotations_file: Animal 3 Loaded 1 Annotations.csv
epoch_encoder_file: Animal 3 Loaded 1 Epoch Encoder.csv
video_offset: 1226 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG11
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG11 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG11 # used only if fast loading is off (lazy=False)
# --- ANIMAL 4 ---------------------------------------------------------------
Animal 4 Unloaded 1:
description: 'JG12 2019-05-10 002 [ 147, 165]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 1
data_file: Animal 4 Unloaded 1.axgx
video_file: Animal 4 Unloaded 1.mp4
annotations_file: Animal 4 Unloaded 1 Annotations.csv
epoch_encoder_file: Animal 4 Unloaded 1 Epoch Encoder.csv
video_offset: 147 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: &plots-JG12
- channel: I2
ylim: [-50, 50] # uV
color: *color-traces
- channel: RN
ylim: [-25, 25] # uV
color: *color-traces
- channel: BN2
ylim: [-45, 45] # uV
color: *color-traces
- channel: BN3-DIST
ylim: [-60, 60] # uV
color: *color-traces
- channel: Force
ylim: [-10, 500] # mN
color: *color-traces
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: &litude_discriminators-JG12 # used only if fast loading is off (lazy=False)
- name: B38
channel: BN2
units: uV
amplitude: [7, 20]
epoch: B38 activity
color: *color-B38
- name: I2
channel: I2
units: uV
amplitude: [2, 75]
epoch: I2 protraction activity
color: *color-I2
- name: B8a/b
channel: RN
units: uV
amplitude: [-30, -8]
epoch: B8 activity
color: *color-B8
- name: B6/B9
channel: BN2
units: uV
amplitude: [-25, -9]
epoch: B3/6/9/10 activity
color: *color-B6B9
- name: B3
channel: BN2
units: uV
amplitude: [-60, -25]
epoch: B3/6/9/10 activity
color: *color-B3
- name: B4/B5
channel: BN3-DIST
units: uV
amplitude: [-80, -20]
epoch: B4/B5 activity
color: *color-B4B5
burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
Animal 4 Unloaded 2:
description: 'JG12 2019-05-10 002 [ 228, 245]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2
data_file: Animal 4 Unloaded 2.axgx
video_file: Animal 4 Unloaded 2.mp4
annotations_file: Animal 4 Unloaded 2 Annotations.csv
epoch_encoder_file: Animal 4 Unloaded 2 Epoch Encoder.csv
video_offset: 228 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG12
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
Animal 4 Unloaded 3:
description: 'JG12 2019-05-10 002 [ 277, 291]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 3
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 3
data_file: Animal 4 Unloaded 3.axgx
video_file: Animal 4 Unloaded 3.mp4
annotations_file: Animal 4 Unloaded 3 Annotations.csv
epoch_encoder_file: Animal 4 Unloaded 3 Epoch Encoder.csv
video_offset: 277 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG12
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
Animal 4 Loaded 1:
description: 'JG12 2019-05-10 002 [ 434, 465]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 1
data_file: Animal 4 Loaded 1.axgx
video_file: Animal 4 Loaded 1.mp4
annotations_file: Animal 4 Loaded 1 Annotations.csv
epoch_encoder_file: Animal 4 Loaded 1 Epoch Encoder.csv
video_offset: 434 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG12
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
Animal 4 Loaded 2:
description: 'JG12 2019-05-10 002 [2897, 2937]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2
data_file: Animal 4 Loaded 2.axgx
video_file: Animal 4 Loaded 2.mp4
annotations_file: Animal 4 Loaded 2 Annotations.csv
epoch_encoder_file: Animal 4 Loaded 2 Epoch Encoder.csv
video_offset: 2897 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG12
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
Animal 4 Unloaded 2 Superset:
description: 'JG12 2019-05-10 002 [ 223.4, 261.4]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 Superset
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 Superset
data_file: Animal 4 Unloaded 2 Superset.axgx
video_file: Animal 4 Unloaded 2 Superset.mp4
annotations_file: Animal 4 Unloaded 2 Superset Annotations.csv
epoch_encoder_file: Animal 4 Unloaded 2 Superset Epoch Encoder.csv
video_offset: 223.4 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG12
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
Animal 4 Loaded 2 Superset:
description: 'JG12 2019-05-10 002 [2875.3, 3039.3]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 Superset
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 Superset
data_file: Animal 4 Loaded 2 Superset.axgx
video_file: Animal 4 Loaded 2 Superset.mp4
annotations_file: Animal 4 Loaded 2 Superset Annotations.csv
epoch_encoder_file: Animal 4 Loaded 2 Superset Epoch Encoder.csv
video_offset: 2875.3 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG12
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
# --- ANIMAL 5 ---------------------------------------------------------------
Animal 5 Unloaded 1:
description: 'JG14 2019-07-30 001 [1834, 1865]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 1
data_file: Animal 5 Unloaded 1.axgx
video_file: Animal 5 Unloaded 1.mp4
annotations_file: Animal 5 Unloaded 1 Annotations.csv
epoch_encoder_file: Animal 5 Unloaded 1 Epoch Encoder.csv
video_offset: 1834 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: &plots-JG14
- channel: I2
ylim: [-30, 30] # uV
color: *color-traces
- channel: RN
ylim: [-30, 30] # uV
color: *color-traces
- channel: BN2
ylim: [-50, 50] # uV
color: *color-traces
- channel: BN3-PROX
ylim: [-60, 60] # uV
color: *color-traces
- channel: Force
ylim: [-10, 500] # mN
color: *color-traces
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: &litude_discriminators-JG14 # used only if fast loading is off (lazy=False)
- name: B38
channel: BN2
units: uV
amplitude: [12, 25]
epoch: B38 activity
color: *color-B38
- name: I2
channel: I2
units: uV
amplitude: [1, 10]
epoch: I2 protraction activity
color: *color-I2
- name: B8a/b
channel: RN
units: uV
amplitude: [-15, -6]
epoch: B8 activity
color: *color-B8
- name: B6/B9
channel: BN2
units: uV
amplitude: [-30, -20]
epoch: B3/6/9/10 activity
color: *color-B6B9
- name: B3
channel: BN2
units: uV
amplitude: [-80, -30]
epoch: B3/6/9/10 activity
color: *color-B3
- name: B4/B5
channel: BN3-PROX
units: uV
amplitude: [-40, -13]
epoch: B4/B5 activity
color: *color-B4B5
burst_detectors: &burst_detectors-JG14 # used only if fast loading is off (lazy=False)
- *burst_detectors-B38
- *burst_detectors-I2
- *burst_detectors-B8
- spiketrain: B6/B9
thresholds: [4, 2] # Hz, both thresholds reduced for this animal because B6/B9 always fired slowly
- *burst_detectors-B3
- *burst_detectors-B4B5
Animal 5 Unloaded 2:
description: 'JG14 2019-07-30 001 [1909, 1943]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 2
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 2
data_file: Animal 5 Unloaded 2.axgx
video_file: Animal 5 Unloaded 2.mp4
annotations_file: Animal 5 Unloaded 2 Annotations.csv
epoch_encoder_file: Animal 5 Unloaded 2 Epoch Encoder.csv
video_offset: 1909 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG14
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG14 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG14 # used only if fast loading is off (lazy=False)
Animal 5 Unloaded 3:
description: 'JG14 2019-07-30 001 [2049, 2084]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 3
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 3
data_file: Animal 5 Unloaded 3.axgx
video_file: Animal 5 Unloaded 3.mp4
annotations_file: Animal 5 Unloaded 3 Annotations.csv
epoch_encoder_file: Animal 5 Unloaded 3 Epoch Encoder.csv
video_offset: 2049 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG14
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG14 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG14 # used only if fast loading is off (lazy=False)
Animal 5 Loaded 1:
description: 'JG14 2019-07-29 004 [ 828, 870]'
data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Loaded 1
remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Loaded 1
data_file: Animal 5 Loaded 1.axgx
video_file: Animal 5 Loaded 1.mp4
annotations_file: Animal 5 Loaded 1 Annotations.csv
epoch_encoder_file: Animal 5 Loaded 1 Epoch Encoder.csv
video_offset: 828 # sec
epoch_encoder_possible_labels: *epoch_encoder_possible_labels
plots: *plots-JG14
filters: *filters # used only if fast loading is off (lazy=False)
amplitude_discriminators: *amplitude_discriminators-JG14 # used only if fast loading is off (lazy=False)
burst_detectors: *burst_detectors-JG14 # used only if fast loading is off (lazy=False)